miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 19981 1.06 0.001293
Target:  5'- aGCCCCGCCGGACGCGGAUUCCGGGUUc -3'
miRNA:   3'- -CGGGGCGGCCUGCGCCUAAGGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 135952 0.76 0.184709
Target:  5'- cGCCCUGCUGGACGCGGAgcaauaCUGGa-- -3'
miRNA:   3'- -CGGGGCGGCCUGCGCCUaa----GGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 31247 0.76 0.184709
Target:  5'- cGCCCCGUugCGGGCGgGGGUgggaUCUGGGUc -3'
miRNA:   3'- -CGGGGCG--GCCUGCgCCUA----AGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 22870 0.75 0.207958
Target:  5'- cGCCCCGCC--GCGCGGc--CCGGGUUc -3'
miRNA:   3'- -CGGGGCGGccUGCGCCuaaGGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 102638 0.73 0.256163
Target:  5'- uCCCguCGCCGGGCgGCGGAggggCCGGGg- -3'
miRNA:   3'- cGGG--GCGGCCUG-CGCCUaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 22323 0.73 0.256163
Target:  5'- gGCCgCCGCCacGGACGCGGAcgCgCGGGc- -3'
miRNA:   3'- -CGG-GGCGG--CCUGCGCCUaaG-GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 152646 0.73 0.26205
Target:  5'- cGCCCCGCCGG-CGCGGcccugagugGUgcccgcccCCGGGg- -3'
miRNA:   3'- -CGGGGCGGCCuGCGCC---------UAa-------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 147223 0.73 0.26205
Target:  5'- cCCCCGgCGGAgCGCGGGggccCCGGGg- -3'
miRNA:   3'- cGGGGCgGCCU-GCGCCUaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 3196 0.73 0.268048
Target:  5'- gGCCCCgGCCGG-CGCGGAgg-CGGGc- -3'
miRNA:   3'- -CGGGG-CGGCCuGCGCCUaagGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 79292 0.72 0.293146
Target:  5'- gGCCCCGUgggCGGugGaGGAgUUCCGGGg- -3'
miRNA:   3'- -CGGGGCG---GCCugCgCCU-AAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 36412 0.72 0.2997
Target:  5'- cCCCUGCCGGGCggggcggugggGCGGggUCgGGGUc -3'
miRNA:   3'- cGGGGCGGCCUG-----------CGCCuaAGgCCCAa -5'
5299 5' -62.6 NC_001798.1 + 42141 0.72 0.306368
Target:  5'- uCCCCGCCcaggcuguggaGGACGCGGAUcUCCcgcGGGg- -3'
miRNA:   3'- cGGGGCGG-----------CCUGCGCCUA-AGG---CCCaa -5'
5299 5' -62.6 NC_001798.1 + 73712 0.72 0.313148
Target:  5'- gGCCCCGCucguggCGGGCGCGGcacacaugAUUCCGGc-- -3'
miRNA:   3'- -CGGGGCG------GCCUGCGCC--------UAAGGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 110923 0.72 0.327048
Target:  5'- cCCCCGCCGGcccgcggucaaACGCGGAcaUCCGGu-- -3'
miRNA:   3'- cGGGGCGGCC-----------UGCGCCUa-AGGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 95003 0.71 0.334168
Target:  5'- gGCCCCGCaGGGCGgcgcgggccUGGAggCCGGGg- -3'
miRNA:   3'- -CGGGGCGgCCUGC---------GCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 93084 0.71 0.334168
Target:  5'- aGCCCCaGCgGGGCGCGcgcGAcgCCGGGa- -3'
miRNA:   3'- -CGGGG-CGgCCUGCGC---CUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 36138 0.71 0.3414
Target:  5'- aUCCCGCCGGugggGCGCGGcggcggUCgGGGUg -3'
miRNA:   3'- cGGGGCGGCC----UGCGCCua----AGgCCCAa -5'
5299 5' -62.6 NC_001798.1 + 77242 0.71 0.3414
Target:  5'- cGCCCUGgCGGACGCGGugucggccCUGGGc- -3'
miRNA:   3'- -CGGGGCgGCCUGCGCCuaa-----GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 152513 0.71 0.348745
Target:  5'- cGCCCCGgCGGGgGCGGAgggaGGGa- -3'
miRNA:   3'- -CGGGGCgGCCUgCGCCUaaggCCCaa -5'
5299 5' -62.6 NC_001798.1 + 123402 0.71 0.356202
Target:  5'- gGCCCC-CCGGGagcCGCGGccccgCCGGGUc -3'
miRNA:   3'- -CGGGGcGGCCU---GCGCCuaa--GGCCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.