miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 2071 0.66 0.62286
Target:  5'- -gCCCGCCGcGCucgGCGGAccacUCCGGGg- -3'
miRNA:   3'- cgGGGCGGCcUG---CGCCUa---AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 2499 0.68 0.489773
Target:  5'- aGCgCCGCgGGGCGCGGcggCCGcGGc- -3'
miRNA:   3'- -CGgGGCGgCCUGCGCCuaaGGC-CCaa -5'
5299 5' -62.6 NC_001798.1 + 2666 0.66 0.652094
Target:  5'- cGCCUC-CCGcGGCGCGGAgg-CGGGc- -3'
miRNA:   3'- -CGGGGcGGC-CUGCGCCUaagGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 2994 0.69 0.452299
Target:  5'- gGCCCgCGggccCCGGGCGCGGGggcgcggcgggCCGGGc- -3'
miRNA:   3'- -CGGG-GC----GGCCUGCGCCUaa---------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 3196 0.73 0.268048
Target:  5'- gGCCCCgGCCGG-CGCGGAgg-CGGGc- -3'
miRNA:   3'- -CGGGG-CGGCCuGCGCCUaagGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 3762 0.67 0.593682
Target:  5'- cGCCCaGCuCGGGCGCccacacGGGcgCCGGGg- -3'
miRNA:   3'- -CGGGgCG-GCCUGCG------CCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 4458 0.68 0.517404
Target:  5'- cGCCCCG-CGGAcCGCGGAcgucgucUCCGGu-- -3'
miRNA:   3'- -CGGGGCgGCCU-GCGCCUa------AGGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 4843 0.67 0.593682
Target:  5'- cGCgCgGCgGGGCGaCGG--UCCGGGUUc -3'
miRNA:   3'- -CGgGgCGgCCUGC-GCCuaAGGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 5905 0.67 0.574347
Target:  5'- cGCCCCGaggcgggcCCGGACGgGGGg--CGGGc- -3'
miRNA:   3'- -CGGGGC--------GGCCUGCgCCUaagGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 9645 0.67 0.555161
Target:  5'- cGCCCCgaggcgcagcggGCCGcGCGCGGAgggCgCGGGa- -3'
miRNA:   3'- -CGGGG------------CGGCcUGCGCCUaa-G-GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 11645 0.66 0.642354
Target:  5'- cGUCCCuguguccCCGGGgGCGGGggUCGGGUc -3'
miRNA:   3'- -CGGGGc------GGCCUgCGCCUaaGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 15396 0.68 0.489773
Target:  5'- cGCCCa-CCGGACccgggguuGCGGGU-CCGGGa- -3'
miRNA:   3'- -CGGGgcGGCCUG--------CGCCUAaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 16219 0.66 0.652094
Target:  5'- cGCgCCGCCuguggGGGgGCGGuggggCCGGGg- -3'
miRNA:   3'- -CGgGGCGG-----CCUgCGCCuaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 16940 0.66 0.603391
Target:  5'- cGCCCC-CCGGGgggaGCGGggUCacuuGGGUg -3'
miRNA:   3'- -CGGGGcGGCCUg---CGCCuaAGg---CCCAa -5'
5299 5' -62.6 NC_001798.1 + 18213 0.7 0.378454
Target:  5'- aGCCUCGCCGGgggacgguGgGCGGGaaggguggaugguUUCCGGGg- -3'
miRNA:   3'- -CGGGGCGGCC--------UgCGCCU-------------AAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 19981 1.06 0.001293
Target:  5'- aGCCCCGCCGGACGCGGAUUCCGGGUUc -3'
miRNA:   3'- -CGGGGCGGCCUGCGCCUAAGGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 20356 0.67 0.555161
Target:  5'- gGCgCUGCCGG--GCGGGUUCgGGGc- -3'
miRNA:   3'- -CGgGGCGGCCugCGCCUAAGgCCCaa -5'
5299 5' -62.6 NC_001798.1 + 21824 0.67 0.574347
Target:  5'- -gCCCGCgGGAugaCGCGGGccCCGGGc- -3'
miRNA:   3'- cgGGGCGgCCU---GCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 21941 0.67 0.564733
Target:  5'- gGCCCCGCCcccuuugggcGGAgcgcgggaugaCGCGGGccCCGGGc- -3'
miRNA:   3'- -CGGGGCGG----------CCU-----------GCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 22263 0.67 0.555161
Target:  5'- cGCCCgCGCCGGGCGCuaaugaGAUgccgCgCGGGc- -3'
miRNA:   3'- -CGGG-GCGGCCUGCGc-----CUAa---G-GCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.