miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 152999 0.69 0.47174
Target:  5'- aGCCggcgcggggcggUCGCCGGG-GCGGAgUCCGGGc- -3'
miRNA:   3'- -CGG------------GGCGGCCUgCGCCUaAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 152646 0.73 0.26205
Target:  5'- cGCCCCGCCGG-CGCGGcccugagugGUgcccgcccCCGGGg- -3'
miRNA:   3'- -CGGGGCGGCCuGCGCC---------UAa-------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 152513 0.71 0.348745
Target:  5'- cGCCCCGgCGGGgGCGGAgggaGGGa- -3'
miRNA:   3'- -CGGGGCgGCCUgCGCCUaaggCCCaa -5'
5299 5' -62.6 NC_001798.1 + 151606 0.67 0.583999
Target:  5'- cGCUCgGCCGGGgGcCGGg--CCGGGg- -3'
miRNA:   3'- -CGGGgCGGCCUgC-GCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 151274 0.69 0.442744
Target:  5'- cGgCCCGCaCGGccgccucggccuccACGCGGGU-CCGGGg- -3'
miRNA:   3'- -CgGGGCG-GCC--------------UGCGCCUAaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 150829 0.67 0.545637
Target:  5'- uGCUCCGCgGGGCGCcagGGGgcgccggUCGGGUc -3'
miRNA:   3'- -CGGGGCGgCCUGCG---CCUaa-----GGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 150183 0.67 0.574347
Target:  5'- cGCCCCcuCCGcGGCGUGGGgggcggcaCCGGGg- -3'
miRNA:   3'- -CGGGGc-GGC-CUGCGCCUaa------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 149658 0.69 0.454048
Target:  5'- gGCCgggCGCCGGGuCGCGGGccCCGGGc- -3'
miRNA:   3'- -CGGg--GCGGCCU-GCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 147223 0.73 0.26205
Target:  5'- cCCCCGgCGGAgCGCGGGggccCCGGGg- -3'
miRNA:   3'- cGGGGCgGCCU-GCGCCUaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 142130 0.67 0.545637
Target:  5'- cGCgCUGCCGGACGCGGca--CaGGUg -3'
miRNA:   3'- -CGgGGCGGCCUGCGCCuaagGcCCAa -5'
5299 5' -62.6 NC_001798.1 + 135952 0.76 0.184709
Target:  5'- cGCCCUGCUGGACGCGGAgcaauaCUGGa-- -3'
miRNA:   3'- -CGGGGCGGCCUGCGCCUaa----GGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 135784 0.7 0.403251
Target:  5'- cGgCCCGCCGGaggaggccguguGCGCGGc--CCGGGg- -3'
miRNA:   3'- -CgGGGCGGCC------------UGCGCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 135209 0.68 0.536167
Target:  5'- cGCCCuCGCgGGccuCGgGGAggCCGGGc- -3'
miRNA:   3'- -CGGG-GCGgCCu--GCgCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 134660 0.66 0.602419
Target:  5'- gGCCCCG-CGGACacccgcaGCGGGUcacggCgCGGGUg -3'
miRNA:   3'- -CGGGGCgGCCUG-------CGCCUAa----G-GCCCAa -5'
5299 5' -62.6 NC_001798.1 + 134394 0.66 0.613119
Target:  5'- cGCCCUcCUGGACGUGGAggCCaaGGUc -3'
miRNA:   3'- -CGGGGcGGCCUGCGCCUaaGGc-CCAa -5'
5299 5' -62.6 NC_001798.1 + 132181 0.67 0.593682
Target:  5'- cGCCCCcCCGGACGCcaccuucUUCGGGg- -3'
miRNA:   3'- -CGGGGcGGCCUGCGccua---AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 130300 0.69 0.436723
Target:  5'- aGCgCCGaauGGGCGCGGug-CCGGGUg -3'
miRNA:   3'- -CGgGGCgg-CCUGCGCCuaaGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 129350 0.7 0.403251
Target:  5'- aGCgCCCGCCGGGCcugGCGGGgcccCCGGa-- -3'
miRNA:   3'- -CG-GGGCGGCCUG---CGCCUaa--GGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 129295 0.66 0.62286
Target:  5'- gGCaCCGCgCGGGCGCGGAgga-GGGc- -3'
miRNA:   3'- -CGgGGCG-GCCUGCGCCUaaggCCCaa -5'
5299 5' -62.6 NC_001798.1 + 123402 0.71 0.356202
Target:  5'- gGCCCC-CCGGGagcCGCGGccccgCCGGGUc -3'
miRNA:   3'- -CGGGGcGGCCU---GCGCCuaa--GGCCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.