miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 22323 0.73 0.256163
Target:  5'- gGCCgCCGCCacGGACGCGGAcgCgCGGGc- -3'
miRNA:   3'- -CGG-GGCGG--CCUGCGCCUaaG-GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 22870 0.75 0.207958
Target:  5'- cGCCCCGCC--GCGCGGc--CCGGGUUc -3'
miRNA:   3'- -CGGGGCGGccUGCGCCuaaGGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 22938 0.66 0.60728
Target:  5'- cGCCgCCGCCGaugccgugccgacgaGGCGgcccCGGcgUCCGGGg- -3'
miRNA:   3'- -CGG-GGCGGC---------------CUGC----GCCuaAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 23997 0.69 0.436723
Target:  5'- uGCUguacaCGCCGGACGCGGAggcgaUGGGg- -3'
miRNA:   3'- -CGGg----GCGGCCUGCGCCUaag--GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 24285 0.67 0.583999
Target:  5'- cGCCCCuGCUGGcgcgcgagaACGCGGcgcugaCCGGGg- -3'
miRNA:   3'- -CGGGG-CGGCC---------UGCGCCuaa---GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 25072 0.67 0.563774
Target:  5'- aGCCCCGCCccggccaGGGCGCcg---CCGGGc- -3'
miRNA:   3'- -CGGGGCGG-------CCUGCGccuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 25603 0.69 0.454048
Target:  5'- gGCCgCGCCGGGgGCGGGccccccCCGGaGUg -3'
miRNA:   3'- -CGGgGCGGCCUgCGCCUaa----GGCC-CAa -5'
5299 5' -62.6 NC_001798.1 + 25791 0.66 0.603391
Target:  5'- gGCCuUCGCCGGcgcCGUGGAgUUCCuGGGg- -3'
miRNA:   3'- -CGG-GGCGGCCu--GCGCCU-AAGG-CCCaa -5'
5299 5' -62.6 NC_001798.1 + 27214 0.68 0.517404
Target:  5'- aGCCCCcgggGCgGGGCGCGGGggaggcggCCGcGGg- -3'
miRNA:   3'- -CGGGG----CGgCCUGCGCCUaa------GGC-CCaa -5'
5299 5' -62.6 NC_001798.1 + 27538 0.68 0.49891
Target:  5'- aGCCCCGCgGcGCGCGGGgggaGGGg- -3'
miRNA:   3'- -CGGGGCGgCcUGCGCCUaaggCCCaa -5'
5299 5' -62.6 NC_001798.1 + 27565 0.67 0.593682
Target:  5'- gGCgCCCGCgGGGgaGCGGccggcUCCGGGg- -3'
miRNA:   3'- -CG-GGGCGgCCUg-CGCCua---AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 28615 0.66 0.642354
Target:  5'- cGCCUgGCCcGACGgGGGUcCUGGGc- -3'
miRNA:   3'- -CGGGgCGGcCUGCgCCUAaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 29400 0.69 0.46285
Target:  5'- gGCCgCGCCGG-CGgGGcg-CCGGGg- -3'
miRNA:   3'- -CGGgGCGGCCuGCgCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 29537 0.7 0.403251
Target:  5'- cCCCCGCCGGggcGCGCGGcuaUUgGGGg- -3'
miRNA:   3'- cGGGGCGGCC---UGCGCCua-AGgCCCaa -5'
5299 5' -62.6 NC_001798.1 + 31141 0.67 0.545637
Target:  5'- cGCCCCgGCgCGGGgGCGGcggUgCGGGg- -3'
miRNA:   3'- -CGGGG-CG-GCCUgCGCCua-AgGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 31247 0.76 0.184709
Target:  5'- cGCCCCGUugCGGGCGgGGGUgggaUCUGGGUc -3'
miRNA:   3'- -CGGGGCG--GCCUGCgCCUA----AGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 31637 0.68 0.49616
Target:  5'- cGCCCCcguggugucugcgaGCgCGGACGCGG---CCGGGc- -3'
miRNA:   3'- -CGGGG--------------CG-GCCUGCGCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 31801 0.67 0.574347
Target:  5'- ----gGCCGGGCGCGGAgggaggacCCGGGg- -3'
miRNA:   3'- cggggCGGCCUGCGCCUaa------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 34791 0.69 0.47174
Target:  5'- aCgCCGCCGG-CGCGGc--CCGGGg- -3'
miRNA:   3'- cGgGGCGGCCuGCGCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 34827 0.7 0.418949
Target:  5'- cGCUCCGCCGGGgGCccgggccGGAccgCCGGGc- -3'
miRNA:   3'- -CGGGGCGGCCUgCG-------CCUaa-GGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.