miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 145611 0.69 0.805945
Target:  5'- -cCGCGACcccGACCCCGCCCCa----- -3'
miRNA:   3'- gaGUGUUGu--UUGGGGCGGGGcguagu -5'
5301 5' -55.1 NC_001798.1 + 86107 0.69 0.81479
Target:  5'- -cCGCcGCGGACgCCCGCCgCGCcgCGg -3'
miRNA:   3'- gaGUGuUGUUUG-GGGCGGgGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 126475 0.69 0.823466
Target:  5'- --gACGGCcauGACCUCGCCCC-CGUCGc -3'
miRNA:   3'- gagUGUUGu--UUGGGGCGGGGcGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 30562 0.69 0.823466
Target:  5'- -gCACgGACGAgaucGCCCCGCCCCuGCGc-- -3'
miRNA:   3'- gaGUG-UUGUU----UGGGGCGGGG-CGUagu -5'
5301 5' -55.1 NC_001798.1 + 51401 0.69 0.823466
Target:  5'- --gACGACu-ACCCCGCCgCCGUcgCGc -3'
miRNA:   3'- gagUGUUGuuUGGGGCGG-GGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 40017 0.69 0.823466
Target:  5'- gUCGCGGCGGcccuCCUCGUCCCGC-UCc -3'
miRNA:   3'- gAGUGUUGUUu---GGGGCGGGGCGuAGu -5'
5301 5' -55.1 NC_001798.1 + 58106 0.69 0.823466
Target:  5'- gUCGCGGCc-GCCCaggGCCCgGCGUCu -3'
miRNA:   3'- gAGUGUUGuuUGGGg--CGGGgCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 50416 0.68 0.831965
Target:  5'- --gGCGGCGcGCCCCccccccaccaccGCCCCGCcUCAc -3'
miRNA:   3'- gagUGUUGUuUGGGG------------CGGGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 149798 0.68 0.831965
Target:  5'- -aCGCGACGcuCCCaccaGCCCCGCccgCAg -3'
miRNA:   3'- gaGUGUUGUuuGGGg---CGGGGCGua-GU- -5'
5301 5' -55.1 NC_001798.1 + 131004 0.68 0.831965
Target:  5'- aUCGCcauACGGGCCgCCGCCaggcgacgggCCGCAUCc -3'
miRNA:   3'- gAGUGu--UGUUUGG-GGCGG----------GGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 5889 0.68 0.831965
Target:  5'- gUCAUcccGCGGGCUCCGCCCCGaggCGg -3'
miRNA:   3'- gAGUGu--UGUUUGGGGCGGGGCguaGU- -5'
5301 5' -55.1 NC_001798.1 + 82051 0.68 0.831965
Target:  5'- cCUCGcCGACAccCCCCcgggGCCCCGCGg-- -3'
miRNA:   3'- -GAGU-GUUGUuuGGGG----CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 14806 0.68 0.84028
Target:  5'- aUCGCcuGC--GCCCCGCCCgGCcgCGc -3'
miRNA:   3'- gAGUGu-UGuuUGGGGCGGGgCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 91508 0.68 0.84028
Target:  5'- uCUUAcCGGCGGACCCgCGCCCgggucccuucugCGCGUCc -3'
miRNA:   3'- -GAGU-GUUGUUUGGG-GCGGG------------GCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 80784 0.68 0.84028
Target:  5'- aCUCGCGccccgGCGGGCCggacgCCGCCCUGCG-CGa -3'
miRNA:   3'- -GAGUGU-----UGUUUGG-----GGCGGGGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 25201 0.68 0.84028
Target:  5'- -cCGCGGCc-GCCgCGCCCCGCggCGc -3'
miRNA:   3'- gaGUGUUGuuUGGgGCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 122862 0.68 0.84028
Target:  5'- uCUCAgCGACGAcauCCCCGC-CCGCuUCGc -3'
miRNA:   3'- -GAGU-GUUGUUu--GGGGCGgGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 132327 0.68 0.84028
Target:  5'- aCUCGCuc---ACCCCGCCCgGCGa-- -3'
miRNA:   3'- -GAGUGuuguuUGGGGCGGGgCGUagu -5'
5301 5' -55.1 NC_001798.1 + 68217 0.68 0.847598
Target:  5'- aUCACGcGCAGgcccgccACCCCGCCgCGCGcCAc -3'
miRNA:   3'- gAGUGU-UGUU-------UGGGGCGGgGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 7909 0.68 0.848402
Target:  5'- aUCGCcGC-GGCUgCGCCCUGCGUCc -3'
miRNA:   3'- gAGUGuUGuUUGGgGCGGGGCGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.