miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 546 0.71 0.710188
Target:  5'- gCUCGCAGC-AGCCCCucccucccgcGCCCCGUg--- -3'
miRNA:   3'- -GAGUGUUGuUUGGGG----------CGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 4963 0.71 0.720223
Target:  5'- aUCGCGACcucGGCCCCgcgGCCCugCGCGUCGu -3'
miRNA:   3'- gAGUGUUGu--UUGGGG---CGGG--GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 145707 0.7 0.729188
Target:  5'- aCUCGgcggacCAGCGAGCCCCggccccggcccgcGCCCCGCcgCc -3'
miRNA:   3'- -GAGU------GUUGUUUGGGG-------------CGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 43339 0.7 0.73018
Target:  5'- --gGCGGCAGugCCgCcCCCCGCGUCGu -3'
miRNA:   3'- gagUGUUGUUugGG-GcGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 57894 0.7 0.73018
Target:  5'- -cCACGGCAc-CCCCGCCCC-CAUUu -3'
miRNA:   3'- gaGUGUUGUuuGGGGCGGGGcGUAGu -5'
5301 5' -55.1 NC_001798.1 + 129034 0.7 0.73018
Target:  5'- --gGCGAU--GCUCCGCCCCGgAUCGg -3'
miRNA:   3'- gagUGUUGuuUGGGGCGGGGCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 139298 0.7 0.740052
Target:  5'- -gCAUAGCGccgcguCgCCGCCCCGCGUCc -3'
miRNA:   3'- gaGUGUUGUuu----GgGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 76577 0.7 0.749828
Target:  5'- --gGCGACcGGCCCCGCgCCGUacGUCGa -3'
miRNA:   3'- gagUGUUGuUUGGGGCGgGGCG--UAGU- -5'
5301 5' -55.1 NC_001798.1 + 25065 0.7 0.749828
Target:  5'- -gCGCAA-GAGCCCCGCCCCGg---- -3'
miRNA:   3'- gaGUGUUgUUUGGGGCGGGGCguagu -5'
5301 5' -55.1 NC_001798.1 + 35014 0.7 0.759498
Target:  5'- cCUCgGCGGcCAAGCCCCGgCCCGCc--- -3'
miRNA:   3'- -GAG-UGUU-GUUUGGGGCgGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 20438 0.7 0.759498
Target:  5'- gUC-CAGgcGGCUCCGCUCCGCAUCu -3'
miRNA:   3'- gAGuGUUguUUGGGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 47954 0.7 0.769054
Target:  5'- --gGCGACcGACCCCGC-CCGCggCAg -3'
miRNA:   3'- gagUGUUGuUUGGGGCGgGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 75324 0.7 0.769054
Target:  5'- uUCGCAGCucACCaucaaCGCCCUGCgGUCGc -3'
miRNA:   3'- gAGUGUUGuuUGGg----GCGGGGCG-UAGU- -5'
5301 5' -55.1 NC_001798.1 + 82682 0.7 0.777549
Target:  5'- uCUCGCGcuucACGucGACUCCGCgcccccaCCCGCAUCGc -3'
miRNA:   3'- -GAGUGU----UGU--UUGGGGCG-------GGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 128751 0.7 0.778486
Target:  5'- cCUCACGGCuaccuGGcCCCCGCCCCcCAg-- -3'
miRNA:   3'- -GAGUGUUGu----UU-GGGGCGGGGcGUagu -5'
5301 5' -55.1 NC_001798.1 + 4029 0.69 0.787784
Target:  5'- gUCGCGGCcGGCCaCCGCCgCGCGg-- -3'
miRNA:   3'- gAGUGUUGuUUGG-GGCGGgGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 81808 0.69 0.787784
Target:  5'- -cCGcCGGCAcuCCCCGCCCCG-GUCGc -3'
miRNA:   3'- gaGU-GUUGUuuGGGGCGGGGCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 123177 0.69 0.787784
Target:  5'- cCUCAgccucGCAGACCCCGUCgCGCGUg- -3'
miRNA:   3'- -GAGUgu---UGUUUGGGGCGGgGCGUAgu -5'
5301 5' -55.1 NC_001798.1 + 88792 0.69 0.796941
Target:  5'- --aGCAGCugaucGAACUCCGCCCagcgCGCGUCAc -3'
miRNA:   3'- gagUGUUG-----UUUGGGGCGGG----GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 74792 0.69 0.796941
Target:  5'- -cCACcGCAcgccGCCCCGcCCCCGCAg-- -3'
miRNA:   3'- gaGUGuUGUu---UGGGGC-GGGGCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.