miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 19349 1.09 0.003613
Target:  5'- cCUCACAACAAACCCCGCCCCGCAUCAu -3'
miRNA:   3'- -GAGUGUUGUUUGGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 127836 0.75 0.467357
Target:  5'- uCUgGCGACcgucuuuGGGCCCCGCCCCGCccCAc -3'
miRNA:   3'- -GAgUGUUG-------UUUGGGGCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 105073 0.75 0.477769
Target:  5'- aCUCcCGACGAACCCgCgGCCCCGCGg-- -3'
miRNA:   3'- -GAGuGUUGUUUGGG-G-CGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 52752 0.74 0.516544
Target:  5'- -aCACGugGAcCUUCGCCCCGCGUCc -3'
miRNA:   3'- gaGUGUugUUuGGGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 117142 0.73 0.597341
Target:  5'- uUCAaGAUGAGCCCCgugGCCCUGUAUCAc -3'
miRNA:   3'- gAGUgUUGUUUGGGG---CGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 68943 0.72 0.617935
Target:  5'- gUC-CAGCcgcGCCCCGgCCCGCGUCc -3'
miRNA:   3'- gAGuGUUGuu-UGGGGCgGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 81102 0.72 0.638573
Target:  5'- uCUCGCGGCGAGCgCCGCCgaCGCGg-- -3'
miRNA:   3'- -GAGUGUUGUUUGgGGCGGg-GCGUagu -5'
5301 5' -55.1 NC_001798.1 + 118056 0.72 0.638573
Target:  5'- aUCACcuGCGccagcGACCCCGCCCUGCuacgCAg -3'
miRNA:   3'- gAGUGu-UGU-----UUGGGGCGGGGCGua--GU- -5'
5301 5' -55.1 NC_001798.1 + 10857 0.72 0.638573
Target:  5'- aCUC-CAACAaaaaacaccAACCCgGCCCCGCGa-- -3'
miRNA:   3'- -GAGuGUUGU---------UUGGGgCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 124275 0.72 0.648888
Target:  5'- --uGCGGCAggcGACCcgCCGCCCgCGCAUCAc -3'
miRNA:   3'- gagUGUUGU---UUGG--GGCGGG-GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 121190 0.72 0.648888
Target:  5'- uCUCACccgggacccgAGC-AGCCCCGCCUCGCugauUCAc -3'
miRNA:   3'- -GAGUG----------UUGuUUGGGGCGGGGCGu---AGU- -5'
5301 5' -55.1 NC_001798.1 + 25130 0.72 0.659189
Target:  5'- -gCGCgGACGccCCCCGCCCCGCGg-- -3'
miRNA:   3'- gaGUG-UUGUuuGGGGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 43123 0.72 0.669469
Target:  5'- uUC-CGGCGGGCgCgCGUCCCGCGUCAc -3'
miRNA:   3'- gAGuGUUGUUUGgG-GCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 47824 0.72 0.669469
Target:  5'- uCUCACGGC---CCCgGCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuuuGGGgCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 107468 0.71 0.679717
Target:  5'- --gACGGCGcgggguCUCUGCCCCGCAUCGa -3'
miRNA:   3'- gagUGUUGUuu----GGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 417 0.71 0.689926
Target:  5'- gCUCGCGGC-AGCCCCucccCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuUUGGGGc---GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 154325 0.71 0.689926
Target:  5'- -gCAgGACGggGACuCCCGCCCCGCcUCu -3'
miRNA:   3'- gaGUgUUGU--UUG-GGGCGGGGCGuAGu -5'
5301 5' -55.1 NC_001798.1 + 52803 0.71 0.689926
Target:  5'- --gACGGCAGACCCCGCcuuCCUGC-UCGa -3'
miRNA:   3'- gagUGUUGUUUGGGGCG---GGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 80174 0.71 0.689926
Target:  5'- gUC-CAGCGccuGACCCCGCaucccgacgCCCGCAUCc -3'
miRNA:   3'- gAGuGUUGU---UUGGGGCG---------GGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 102832 0.71 0.710188
Target:  5'- -gCGCAgggGCAGACUCCGCCCCcCAUa- -3'
miRNA:   3'- gaGUGU---UGUUUGGGGCGGGGcGUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.