miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 417 0.71 0.689926
Target:  5'- gCUCGCGGC-AGCCCCucccCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuUUGGGGc---GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 546 0.71 0.710188
Target:  5'- gCUCGCAGC-AGCCCCucccucccgcGCCCCGUg--- -3'
miRNA:   3'- -GAGUGUUGuUUGGGG----------CGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 2884 0.66 0.933911
Target:  5'- -cCACGcGCAGGuCCCCGCgCaggCGCAUCAg -3'
miRNA:   3'- gaGUGU-UGUUU-GGGGCG-Gg--GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 4029 0.69 0.787784
Target:  5'- gUCGCGGCcGGCCaCCGCCgCGCGg-- -3'
miRNA:   3'- gAGUGUUGuUUGG-GGCGGgGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 4152 0.67 0.905693
Target:  5'- cCUCGCgGGCAc-CCCCGCCuCCuCGUCGu -3'
miRNA:   3'- -GAGUG-UUGUuuGGGGCGG-GGcGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 4481 0.67 0.892725
Target:  5'- uCUC-CGguccGCGGACCCagCGgCCCGCGUCGc -3'
miRNA:   3'- -GAGuGU----UGUUUGGG--GCgGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 4963 0.71 0.720223
Target:  5'- aUCGCGACcucGGCCCCgcgGCCCugCGCGUCGu -3'
miRNA:   3'- gAGUGUUGu--UUGGGG---CGGG--GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 5346 0.68 0.86404
Target:  5'- -cCGCAuuauGCGcGGCCCCGCCCCgacgcccgcGCGUCc -3'
miRNA:   3'- gaGUGU----UGU-UUGGGGCGGGG---------CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 5889 0.68 0.831965
Target:  5'- gUCAUcccGCGGGCUCCGCCCCGaggCGg -3'
miRNA:   3'- gAGUGu--UGUUUGGGGCGGGGCguaGU- -5'
5301 5' -55.1 NC_001798.1 + 7550 0.67 0.885891
Target:  5'- -gCACGuACG--UUCUGCCCCGCGUCGg -3'
miRNA:   3'- gaGUGU-UGUuuGGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 7909 0.68 0.848402
Target:  5'- aUCGCcGC-GGCUgCGCCCUGCGUCc -3'
miRNA:   3'- gAGUGuUGuUUGGgGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 10857 0.72 0.638573
Target:  5'- aCUC-CAACAaaaaacaccAACCCgGCCCCGCGa-- -3'
miRNA:   3'- -GAGuGUUGU---------UUGGGgCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 14806 0.68 0.84028
Target:  5'- aUCGCcuGC--GCCCCGCCCgGCcgCGc -3'
miRNA:   3'- gAGUGu-UGuuUGGGGCGGGgCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 16272 0.66 0.923351
Target:  5'- -cCACAACAGACCCacgugcagcuCGCCgCCGaguUCGa -3'
miRNA:   3'- gaGUGUUGUUUGGG----------GCGG-GGCgu-AGU- -5'
5301 5' -55.1 NC_001798.1 + 18389 0.66 0.928753
Target:  5'- aCUUACGACAGGCCauuugCCGCgUCGCGc-- -3'
miRNA:   3'- -GAGUGUUGUUUGG-----GGCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 19349 1.09 0.003613
Target:  5'- cCUCACAACAAACCCCGCCCCGCAUCAu -3'
miRNA:   3'- -GAGUGUUGUUUGGGGCGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 20438 0.7 0.759498
Target:  5'- gUC-CAGgcGGCUCCGCUCCGCAUCu -3'
miRNA:   3'- gAGuGUUguUUGGGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 21778 0.68 0.848402
Target:  5'- -gCGCGAgGAACggCCCGCCCCcCGUCc -3'
miRNA:   3'- gaGUGUUgUUUG--GGGCGGGGcGUAGu -5'
5301 5' -55.1 NC_001798.1 + 22850 0.67 0.905067
Target:  5'- -cCACccCGAACCCggaccguCGCCCCGCcgCGc -3'
miRNA:   3'- gaGUGuuGUUUGGG-------GCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 23291 0.66 0.91182
Target:  5'- gUCGCcGCGAcCCCCggcGCCCCGCc--- -3'
miRNA:   3'- gAGUGuUGUUuGGGG---CGGGGCGuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.