miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 154325 0.71 0.689926
Target:  5'- -gCAgGACGggGACuCCCGCCCCGCcUCu -3'
miRNA:   3'- gaGUgUUGU--UUG-GGGCGGGGCGuAGu -5'
5301 5' -55.1 NC_001798.1 + 153844 0.66 0.938827
Target:  5'- cCUC-CGGCGccuuccCCCCGCCCuCGC-UCGg -3'
miRNA:   3'- -GAGuGUUGUuu----GGGGCGGG-GCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 149798 0.68 0.831965
Target:  5'- -aCGCGACGcuCCCaccaGCCCCGCccgCAg -3'
miRNA:   3'- gaGUGUUGUuuGGGg---CGGGGCGua-GU- -5'
5301 5' -55.1 NC_001798.1 + 148226 0.66 0.928753
Target:  5'- -aCGC-GCGAGCCCCcucGCCCCGaugggaGUCu -3'
miRNA:   3'- gaGUGuUGUUUGGGG---CGGGGCg-----UAGu -5'
5301 5' -55.1 NC_001798.1 + 146764 0.67 0.899327
Target:  5'- --aGCc-CGAGCCCCGCCCgCGUGUUg -3'
miRNA:   3'- gagUGuuGUUUGGGGCGGG-GCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 146599 0.66 0.923351
Target:  5'- -cCGCGGCGccagcGGCCCaCGCCucccgCCGCAUUAg -3'
miRNA:   3'- gaGUGUUGU-----UUGGG-GCGG-----GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 145963 0.66 0.91182
Target:  5'- -cCACccACcuACCCCGCgCCCGCAg-- -3'
miRNA:   3'- gaGUGu-UGuuUGGGGCG-GGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 145757 0.67 0.905693
Target:  5'- -cCACGGC--ACCCCcCCCCGCcgCc -3'
miRNA:   3'- gaGUGUUGuuUGGGGcGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 145707 0.7 0.729188
Target:  5'- aCUCGgcggacCAGCGAGCCCCggccccggcccgcGCCCCGCcgCc -3'
miRNA:   3'- -GAGU------GUUGUUUGGGG-------------CGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 145611 0.69 0.805945
Target:  5'- -cCGCGACcccGACCCCGCCCCa----- -3'
miRNA:   3'- gaGUGUUGu--UUGGGGCGGGGcguagu -5'
5301 5' -55.1 NC_001798.1 + 142538 0.66 0.923351
Target:  5'- --gACcACAccCCCCGcCCCCGUAUCc -3'
miRNA:   3'- gagUGuUGUuuGGGGC-GGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 139852 0.68 0.856324
Target:  5'- cCUgGcCAGC-AGCCCCGCCUCGCu--- -3'
miRNA:   3'- -GAgU-GUUGuUUGGGGCGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 139298 0.7 0.740052
Target:  5'- -gCAUAGCGccgcguCgCCGCCCCGCGUCc -3'
miRNA:   3'- gaGUGUUGUuu----GgGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 134501 0.67 0.897371
Target:  5'- uUCGCGACAGcCCCCagugcgcguccuccGCCUCGC-UCGc -3'
miRNA:   3'- gAGUGUUGUUuGGGG--------------CGGGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 132327 0.68 0.84028
Target:  5'- aCUCGCuc---ACCCCGCCCgGCGa-- -3'
miRNA:   3'- -GAGUGuuguuUGGGGCGGGgCGUagu -5'
5301 5' -55.1 NC_001798.1 + 131004 0.68 0.831965
Target:  5'- aUCGCcauACGGGCCgCCGCCaggcgacgggCCGCAUCc -3'
miRNA:   3'- gAGUGu--UGUUUGG-GGCGG----------GGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 129711 0.68 0.856324
Target:  5'- -gCGCAuCGGACCCC-CCaUCGCGUCAc -3'
miRNA:   3'- gaGUGUuGUUUGGGGcGG-GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 129034 0.7 0.73018
Target:  5'- --gGCGAU--GCUCCGCCCCGgAUCGg -3'
miRNA:   3'- gagUGUUGuuUGGGGCGGGGCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 128821 0.66 0.91182
Target:  5'- -aCGCGuucgaccccGCGGACCCCGgcgcCCCCGCGg-- -3'
miRNA:   3'- gaGUGU---------UGUUUGGGGC----GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 128751 0.7 0.778486
Target:  5'- cCUCACGGCuaccuGGcCCCCGCCCCcCAg-- -3'
miRNA:   3'- -GAGUGUUGu----UU-GGGGCGGGGcGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.