miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 25065 0.7 0.749828
Target:  5'- -gCGCAA-GAGCCCCGCCCCGg---- -3'
miRNA:   3'- gaGUGUUgUUUGGGGCGGGGCguagu -5'
5301 5' -55.1 NC_001798.1 + 25130 0.72 0.659189
Target:  5'- -gCGCgGACGccCCCCGCCCCGCGg-- -3'
miRNA:   3'- gaGUG-UUGUuuGGGGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 25170 0.66 0.917707
Target:  5'- --gGCcGCGccCCCCGCCCCGCc--- -3'
miRNA:   3'- gagUGuUGUuuGGGGCGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 25201 0.68 0.84028
Target:  5'- -cCGCGGCc-GCCgCGCCCCGCggCGc -3'
miRNA:   3'- gaGUGUUGuuUGGgGCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 26444 0.66 0.921683
Target:  5'- -gCGCGACGAcgcggacgcgGgCCCGCCCCcgcagauacgcuggGCGUCGg -3'
miRNA:   3'- gaGUGUUGUU----------UgGGGCGGGG--------------CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 27459 0.67 0.885891
Target:  5'- -gCACAGCcugcuaguCCCCGUCCUGCcgCGc -3'
miRNA:   3'- gaGUGUUGuuu-----GGGGCGGGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 28950 0.66 0.923351
Target:  5'- -cCGCGAgGgcccGGCgCCGCCCCGCcgCu -3'
miRNA:   3'- gaGUGUUgU----UUGgGGCGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 29021 0.66 0.938827
Target:  5'- -gCGCGGgccCGGACUCCGCCCCgGCGa-- -3'
miRNA:   3'- gaGUGUU---GUUUGGGGCGGGG-CGUagu -5'
5301 5' -55.1 NC_001798.1 + 29793 0.66 0.917707
Target:  5'- gCUCccgGGCGGACCCCgGCCCCGag-CGg -3'
miRNA:   3'- -GAGug-UUGUUUGGGG-CGGGGCguaGU- -5'
5301 5' -55.1 NC_001798.1 + 30246 0.68 0.848402
Target:  5'- gUCA-AGCAGcCCgCCGCCCCGCAc-- -3'
miRNA:   3'- gAGUgUUGUUuGG-GGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 30562 0.69 0.823466
Target:  5'- -gCACgGACGAgaucGCCCCGCCCCuGCGc-- -3'
miRNA:   3'- gaGUG-UUGUU----UGGGGCGGGG-CGUagu -5'
5301 5' -55.1 NC_001798.1 + 31607 0.66 0.928753
Target:  5'- -gCGCGucCGGAgUCCGCCCCGCGc-- -3'
miRNA:   3'- gaGUGUu-GUUUgGGGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 31933 0.68 0.86404
Target:  5'- cCUCGCcuCuuccuCCgCCGCCCCGCGcUCGc -3'
miRNA:   3'- -GAGUGuuGuuu--GG-GGCGGGGCGU-AGU- -5'
5301 5' -55.1 NC_001798.1 + 32035 0.66 0.928753
Target:  5'- -cCGCGgccACGGGCCgCuCGCCCCgGCGUCc -3'
miRNA:   3'- gaGUGU---UGUUUGG-G-GCGGGG-CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 32630 0.66 0.933406
Target:  5'- --uGCGugAGGCCCCccgacuacccgacGCCCCccGCGUCGg -3'
miRNA:   3'- gagUGUugUUUGGGG-------------CGGGG--CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 34800 0.66 0.933911
Target:  5'- -gCGCGGCccgGGGCCCCGgggcCCCCGCGc-- -3'
miRNA:   3'- gaGUGUUG---UUUGGGGC----GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 35014 0.7 0.759498
Target:  5'- cCUCgGCGGcCAAGCCCCGgCCCGCc--- -3'
miRNA:   3'- -GAG-UGUU-GUUUGGGGCgGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 35964 0.67 0.878829
Target:  5'- cCUCGCccCGGACCCCucccCCCCGUGUUc -3'
miRNA:   3'- -GAGUGuuGUUUGGGGc---GGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 40017 0.69 0.823466
Target:  5'- gUCGCGGCGGcccuCCUCGUCCCGC-UCc -3'
miRNA:   3'- gAGUGUUGUUu---GGGGCGGGGCGuAGu -5'
5301 5' -55.1 NC_001798.1 + 43123 0.72 0.669469
Target:  5'- uUC-CGGCGGGCgCgCGUCCCGCGUCAc -3'
miRNA:   3'- gAGuGUUGUUUGgG-GCGGGGCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.