miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 146599 0.66 0.923351
Target:  5'- -cCGCGGCGccagcGGCCCaCGCCucccgCCGCAUUAg -3'
miRNA:   3'- gaGUGUUGU-----UUGGG-GCGG-----GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 28950 0.66 0.923351
Target:  5'- -cCGCGAgGgcccGGCgCCGCCCCGCcgCu -3'
miRNA:   3'- gaGUGUUgU----UUGgGGCGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 51912 0.66 0.921683
Target:  5'- cCUCACGGCGuugcggcccgugggGGCCgCCGCCgugCCGCugcUCAg -3'
miRNA:   3'- -GAGUGUUGU--------------UUGG-GGCGG---GGCGu--AGU- -5'
5301 5' -55.1 NC_001798.1 + 26444 0.66 0.921683
Target:  5'- -gCGCGACGAcgcggacgcgGgCCCGCCCCcgcagauacgcuggGCGUCGg -3'
miRNA:   3'- gaGUGUUGUU----------UgGGGCGGGG--------------CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 47888 0.66 0.917707
Target:  5'- gCUCGCAc---GCCCCuCCCCGCGg-- -3'
miRNA:   3'- -GAGUGUuguuUGGGGcGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 29793 0.66 0.917707
Target:  5'- gCUCccgGGCGGACCCCgGCCCCGag-CGg -3'
miRNA:   3'- -GAGug-UUGUUUGGGG-CGGGGCguaGU- -5'
5301 5' -55.1 NC_001798.1 + 118424 0.66 0.917707
Target:  5'- --uGCuGCuGAGCCCUGCCCCGCc--- -3'
miRNA:   3'- gagUGuUG-UUUGGGGCGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 123392 0.66 0.917707
Target:  5'- --gGCGACGccaGGCCCCccgggagccgcgGCCCCGCcggGUCAc -3'
miRNA:   3'- gagUGUUGU---UUGGGG------------CGGGGCG---UAGU- -5'
5301 5' -55.1 NC_001798.1 + 25170 0.66 0.917707
Target:  5'- --gGCcGCGccCCCCGCCCCGCc--- -3'
miRNA:   3'- gagUGuUGUuuGGGGCGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 107439 0.66 0.917707
Target:  5'- -cCGCGGCGAcCCCgCGCCCCGa---- -3'
miRNA:   3'- gaGUGUUGUUuGGG-GCGGGGCguagu -5'
5301 5' -55.1 NC_001798.1 + 102236 0.66 0.91182
Target:  5'- gCUCGgGGCGGGCCUCGCCCgGg---- -3'
miRNA:   3'- -GAGUgUUGUUUGGGGCGGGgCguagu -5'
5301 5' -55.1 NC_001798.1 + 126302 0.66 0.91182
Target:  5'- --gACGGCGccgucuccgGAgCCCGCCCCGgGUCc -3'
miRNA:   3'- gagUGUUGU---------UUgGGGCGGGGCgUAGu -5'
5301 5' -55.1 NC_001798.1 + 127770 0.66 0.91182
Target:  5'- -gCGCcccGCGGACCCCGC-CCGCGa-- -3'
miRNA:   3'- gaGUGu--UGUUUGGGGCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 128821 0.66 0.91182
Target:  5'- -aCGCGuucgaccccGCGGACCCCGgcgcCCCCGCGg-- -3'
miRNA:   3'- gaGUGU---------UGUUUGGGGC----GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 145963 0.66 0.91182
Target:  5'- -cCACccACcuACCCCGCgCCCGCAg-- -3'
miRNA:   3'- gaGUGu-UGuuUGGGGCG-GGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 111082 0.66 0.91182
Target:  5'- gCUCGggcgaGACGGACCCC-CCCgGgGUCAg -3'
miRNA:   3'- -GAGUg----UUGUUUGGGGcGGGgCgUAGU- -5'
5301 5' -55.1 NC_001798.1 + 23291 0.66 0.91182
Target:  5'- gUCGCcGCGAcCCCCggcGCCCCGCc--- -3'
miRNA:   3'- gAGUGuUGUUuGGGG---CGGGGCGuagu -5'
5301 5' -55.1 NC_001798.1 + 78825 0.66 0.91182
Target:  5'- -cCGCGGCGAcgGCCCCGgCCCCuggcGCggCAc -3'
miRNA:   3'- gaGUGUUGUU--UGGGGC-GGGG----CGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 145757 0.67 0.905693
Target:  5'- -cCACGGC--ACCCCcCCCCGCcgCc -3'
miRNA:   3'- gaGUGUUGuuUGGGGcGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 4152 0.67 0.905693
Target:  5'- cCUCGCgGGCAc-CCCCGCCuCCuCGUCGu -3'
miRNA:   3'- -GAGUG-UUGUuuGGGGCGG-GGcGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.