miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 43339 0.7 0.73018
Target:  5'- --gGCGGCAGugCCgCcCCCCGCGUCGu -3'
miRNA:   3'- gagUGUUGUUugGG-GcGGGGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 47824 0.72 0.669469
Target:  5'- uCUCACGGC---CCCgGCCCCGCGc-- -3'
miRNA:   3'- -GAGUGUUGuuuGGGgCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 47888 0.66 0.917707
Target:  5'- gCUCGCAc---GCCCCuCCCCGCGg-- -3'
miRNA:   3'- -GAGUGUuguuUGGGGcGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 47954 0.7 0.769054
Target:  5'- --gGCGACcGACCCCGC-CCGCggCAg -3'
miRNA:   3'- gagUGUUGuUUGGGGCGgGGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 48352 0.66 0.938827
Target:  5'- -aCGCGACcgcGGCCgcccggggCCGCCCCGCGgggCGu -3'
miRNA:   3'- gaGUGUUGu--UUGG--------GGCGGGGCGUa--GU- -5'
5301 5' -55.1 NC_001798.1 + 50416 0.68 0.831965
Target:  5'- --gGCGGCGcGCCCCccccccaccaccGCCCCGCcUCAc -3'
miRNA:   3'- gagUGUUGUuUGGGG------------CGGGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 50971 0.67 0.885891
Target:  5'- gUCcCAu---GCCCCGUCCgCGCAUCGc -3'
miRNA:   3'- gAGuGUuguuUGGGGCGGG-GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 51401 0.69 0.823466
Target:  5'- --gACGACu-ACCCCGCCgCCGUcgCGc -3'
miRNA:   3'- gagUGUUGuuUGGGGCGG-GGCGuaGU- -5'
5301 5' -55.1 NC_001798.1 + 51912 0.66 0.921683
Target:  5'- cCUCACGGCGuugcggcccgugggGGCCgCCGCCgugCCGCugcUCAg -3'
miRNA:   3'- -GAGUGUUGU--------------UUGG-GGCGG---GGCGu--AGU- -5'
5301 5' -55.1 NC_001798.1 + 52752 0.74 0.516544
Target:  5'- -aCACGugGAcCUUCGCCCCGCGUCc -3'
miRNA:   3'- gaGUGUugUUuGGGGCGGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 52803 0.71 0.689926
Target:  5'- --gACGGCAGACCCCGCcuuCCUGC-UCGa -3'
miRNA:   3'- gagUGUUGUUUGGGGCG---GGGCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 53836 0.66 0.923351
Target:  5'- gUCGCcGCcuGGGCCCCGCCgaucgCCGguUCGu -3'
miRNA:   3'- gAGUGuUG--UUUGGGGCGG-----GGCguAGU- -5'
5301 5' -55.1 NC_001798.1 + 54425 0.66 0.933406
Target:  5'- -aUACAACGGACCCgGCgcgacaacgcaccCCCGCcgCu -3'
miRNA:   3'- gaGUGUUGUUUGGGgCG-------------GGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 57894 0.7 0.73018
Target:  5'- -cCACGGCAc-CCCCGCCCC-CAUUu -3'
miRNA:   3'- gaGUGUUGUuuGGGGCGGGGcGUAGu -5'
5301 5' -55.1 NC_001798.1 + 58106 0.69 0.823466
Target:  5'- gUCGCGGCc-GCCCaggGCCCgGCGUCu -3'
miRNA:   3'- gAGUGUUGuuUGGGg--CGGGgCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 58315 0.67 0.892725
Target:  5'- -aCACAGCuccgucAGgCCCGCCgCCGCGUg- -3'
miRNA:   3'- gaGUGUUGu-----UUgGGGCGG-GGCGUAgu -5'
5301 5' -55.1 NC_001798.1 + 59085 0.67 0.899327
Target:  5'- --aACGACAGACCCCacgaaGCCCaGCGUg- -3'
miRNA:   3'- gagUGUUGUUUGGGG-----CGGGgCGUAgu -5'
5301 5' -55.1 NC_001798.1 + 59245 0.66 0.933911
Target:  5'- -cCGCGACAcAUCCCGCaCCCGgGg-- -3'
miRNA:   3'- gaGUGUUGUuUGGGGCG-GGGCgUagu -5'
5301 5' -55.1 NC_001798.1 + 68217 0.68 0.847598
Target:  5'- aUCACGcGCAGgcccgccACCCCGCCgCGCGcCAc -3'
miRNA:   3'- gAGUGU-UGUU-------UGGGGCGGgGCGUaGU- -5'
5301 5' -55.1 NC_001798.1 + 68943 0.72 0.617935
Target:  5'- gUC-CAGCcgcGCCCCGgCCCGCGUCc -3'
miRNA:   3'- gAGuGUUGuu-UGGGGCgGGGCGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.