miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 64092 0.66 0.949308
Target:  5'- gGGGCAcaccggaaucGggGcCGCCCCggcccccgaCGCGUGGg -3'
miRNA:   3'- aCCUGU----------CuuUuGCGGGGag-------GCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 64367 0.71 0.733764
Target:  5'- gUGGagGCGGGGAGCGUCCCgUCCGCc--- -3'
miRNA:   3'- -ACC--UGUCUUUUGCGGGG-AGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 66643 0.66 0.930462
Target:  5'- cGGcguccccCAGAAAccGCGCCaccgCCUCCGCGUu- -3'
miRNA:   3'- aCCu------GUCUUU--UGCGG----GGAGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 66902 0.66 0.949308
Target:  5'- gGGGCGGGGccguCGCUCCaUCUGCGa-- -3'
miRNA:   3'- aCCUGUCUUuu--GCGGGG-AGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 67605 0.67 0.907753
Target:  5'- cGGACGGAGAccGCGCUCCg--GCGaGGg -3'
miRNA:   3'- aCCUGUCUUU--UGCGGGGaggCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 68926 0.67 0.919591
Target:  5'- aGGcauuCGGAAAaccgguccagccGCGCCCCggcCCGCGUc- -3'
miRNA:   3'- aCCu---GUCUUU------------UGCGGGGa--GGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 69217 0.69 0.850349
Target:  5'- aGGGCcaaaaGGAGCGCCCCggccggcUCCGCGUu- -3'
miRNA:   3'- aCCUGuc---UUUUGCGGGG-------AGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 70001 0.68 0.888214
Target:  5'- cGGGC-GAuacuuaGCCCCUCCGUaUAGg -3'
miRNA:   3'- aCCUGuCUuuug--CGGGGAGGCGcAUC- -5'
5303 3' -54.7 NC_001798.1 + 80557 0.7 0.800127
Target:  5'- gGGGCGcGAGGCGUCCCUCCcCG-AGg -3'
miRNA:   3'- aCCUGUcUUUUGCGGGGAGGcGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 85223 0.68 0.865865
Target:  5'- aGGACGuGGAGAgcgacgucgcgccCGCCCCcCCGCGg-- -3'
miRNA:   3'- aCCUGU-CUUUU-------------GCGGGGaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 88367 0.72 0.672246
Target:  5'- cGGGCAGggGucGCGCCagccacuCCUCUGCGg-- -3'
miRNA:   3'- aCCUGUCuuU--UGCGG-------GGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 91104 0.68 0.894961
Target:  5'- gUGGACcccGGu--GCGCUgCUCCGCGgGGg -3'
miRNA:   3'- -ACCUG---UCuuuUGCGGgGAGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 91777 0.67 0.900834
Target:  5'- aGGGCGGcc-ACGCCCCcugCCgaugacgcgcgggGCGUGGg -3'
miRNA:   3'- aCCUGUCuuuUGCGGGGa--GG-------------CGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 91822 0.66 0.949308
Target:  5'- gUGGGCGGGGcccgacgcCGCCCCUCCcaGCa--- -3'
miRNA:   3'- -ACCUGUCUUuu------GCGGGGAGG--CGcauc -5'
5303 3' -54.7 NC_001798.1 + 93252 0.72 0.693668
Target:  5'- aGGGcCAGGAAACGCCCgCggcCCGCGc-- -3'
miRNA:   3'- aCCU-GUCUUUUGCGGG-Ga--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 96169 0.66 0.944956
Target:  5'- aUGG-CGGcc-GCGCCCCcggCCGCGg-- -3'
miRNA:   3'- -ACCuGUCuuuUGCGGGGa--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 97436 0.67 0.907753
Target:  5'- gUGcGACgAGGAGGCGCUgCgCCGCGUGc -3'
miRNA:   3'- -AC-CUG-UCUUUUGCGGgGaGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 97497 0.68 0.874039
Target:  5'- gGGGCcgaGGAGGAagaGCCCCgggccgCCGCGgAGg -3'
miRNA:   3'- aCCUG---UCUUUUg--CGGGGa-----GGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 97573 0.68 0.874039
Target:  5'- aGGACGGGGAGCgcgGCCCCgagCCagggGCGcAGg -3'
miRNA:   3'- aCCUGUCUUUUG---CGGGGa--GG----CGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 101966 0.69 0.838183
Target:  5'- cGGAUAGAGGAgGCCCCgggggggcgaugugCgGCGgcGg -3'
miRNA:   3'- aCCUGUCUUUUgCGGGGa-------------GgCGCauC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.