miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 31810 0.66 0.930462
Target:  5'- cGGAgGGAGGACccgggGUCCC-CCGCGg-- -3'
miRNA:   3'- aCCUgUCUUUUG-----CGGGGaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 32243 0.68 0.881239
Target:  5'- gGGGCugguGGGAGCGUCgCgUCCGCGUc- -3'
miRNA:   3'- aCCUGu---CUUUUGCGG-GgAGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 32562 0.68 0.887527
Target:  5'- cGGACcugcugcGGGccGCGgCCC-CCGCGUGGa -3'
miRNA:   3'- aCCUG-------UCUuuUGCgGGGaGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 34856 0.73 0.64244
Target:  5'- cGGGCGGggGACGCC-UUCCGCc--- -3'
miRNA:   3'- aCCUGUCuuUUGCGGgGAGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 36104 0.68 0.866619
Target:  5'- gUGGugGGggGGgGCCCggCUGCGUc- -3'
miRNA:   3'- -ACCugUCuuUUgCGGGgaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 36640 0.67 0.907753
Target:  5'- cGGGCGGggGcGCGCUuuCC-CCGCGUc- -3'
miRNA:   3'- aCCUGUCuuU-UGCGG--GGaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 39416 0.69 0.817838
Target:  5'- gGGAcCGGGGcGCGgCCgUCCGCGUGc -3'
miRNA:   3'- aCCU-GUCUUuUGCgGGgAGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 39502 0.69 0.851145
Target:  5'- cGGGCccccGGAGACGucgagcugcuCCCCUCCGCGc-- -3'
miRNA:   3'- aCCUGu---CUUUUGC----------GGGGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 39907 0.66 0.949308
Target:  5'- gGGACcuuuGGGAACGCCgcgucgauggCCUCCGCc--- -3'
miRNA:   3'- aCCUGu---CUUUUGCGG----------GGAGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 41525 0.7 0.800127
Target:  5'- aGGGCGGuaucguuguGCGCCCCggcggggcgcaCCGCGUAa -3'
miRNA:   3'- aCCUGUCuuu------UGCGGGGa----------GGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 43083 0.66 0.949308
Target:  5'- cGGGCuc-GGGCGCCgCCgCCGCGUc- -3'
miRNA:   3'- aCCUGucuUUUGCGG-GGaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 43337 0.71 0.753312
Target:  5'- gGGGCGGcAGugcCGCCCC-CCGCGUc- -3'
miRNA:   3'- aCCUGUCuUUu--GCGGGGaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 44485 0.73 0.611534
Target:  5'- aUGGGCcGGGuGCGCCCUUUCGgGUGGu -3'
miRNA:   3'- -ACCUGuCUUuUGCGGGGAGGCgCAUC- -5'
5303 3' -54.7 NC_001798.1 + 47883 0.67 0.901475
Target:  5'- cGGGCGcucgcACGCCCCUccCCGCGg-- -3'
miRNA:   3'- aCCUGUcuuu-UGCGGGGA--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 51185 0.7 0.809064
Target:  5'- cGGGCGGc-GGCGCCCCcCCGCc--- -3'
miRNA:   3'- aCCUGUCuuUUGCGGGGaGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 51515 0.67 0.901475
Target:  5'- cUGGACcGccuGACcCCCCgagucgCCGCGUGGg -3'
miRNA:   3'- -ACCUGuCuu-UUGcGGGGa-----GGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 51755 0.68 0.888214
Target:  5'- cGGGCA-AAAACcaGCCCCUcCCGCGcgaUGGg -3'
miRNA:   3'- aCCUGUcUUUUG--CGGGGA-GGCGC---AUC- -5'
5303 3' -54.7 NC_001798.1 + 52297 0.69 0.851145
Target:  5'- gUGGAgCAGGAGGCGCUgUUUCGCGc-- -3'
miRNA:   3'- -ACCU-GUCUUUUGCGGgGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 52725 0.7 0.781801
Target:  5'- uUGGGCGGAcguGCGCgCCgCCGCGg-- -3'
miRNA:   3'- -ACCUGUCUuu-UGCGgGGaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 55015 0.67 0.901475
Target:  5'- gGGGCcgcccugccGGGAGACGCCCCggacUCCcCGUAc -3'
miRNA:   3'- aCCUG---------UCUUUUGCGGGG----AGGcGCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.