miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 2538 0.75 0.500821
Target:  5'- gGGGCGGggGGCGCggCCC-CCGCGggagGGg -3'
miRNA:   3'- aCCUGUCuuUUGCG--GGGaGGCGCa---UC- -5'
5303 3' -54.7 NC_001798.1 + 13700 0.66 0.940365
Target:  5'- cGGAgGucAAACGCCCCaugCCGUGa-- -3'
miRNA:   3'- aCCUgUcuUUUGCGGGGa--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 15200 0.67 0.901475
Target:  5'- gGGGCuggcgagccggGGGGAGCGUCCgCgggUCCGUGUGGg -3'
miRNA:   3'- aCCUG-----------UCUUUUGCGGG-G---AGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 15615 0.67 0.901475
Target:  5'- cGGGCGGGGAGgcgacUGCCguuuCCUCCgGCGUAa -3'
miRNA:   3'- aCCUGUCUUUU-----GCGG----GGAGG-CGCAUc -5'
5303 3' -54.7 NC_001798.1 + 16186 0.7 0.762929
Target:  5'- gGGACcgGGggGACGCacgggccgCCCUCCGCa--- -3'
miRNA:   3'- aCCUG--UCuuUUGCG--------GGGAGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 18049 1.09 0.004116
Target:  5'- aUGGACAGAAAACGCCCCUCCGCGUAGu -3'
miRNA:   3'- -ACCUGUCUUUUGCGGGGAGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 18265 0.68 0.866619
Target:  5'- gGGGcCAGGu-ACGCaUCCUCCGCGgGGg -3'
miRNA:   3'- aCCU-GUCUuuUGCG-GGGAGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 20016 0.7 0.800127
Target:  5'- cGGcCGGGGAGgGCCCCcccUCCGUGUcGGa -3'
miRNA:   3'- aCCuGUCUUUUgCGGGG---AGGCGCA-UC- -5'
5303 3' -54.7 NC_001798.1 + 20775 0.71 0.713857
Target:  5'- gGGAgcGAcgGCGCCCg-CCGCGUAGg -3'
miRNA:   3'- aCCUguCUuuUGCGGGgaGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 22199 0.68 0.866619
Target:  5'- aGGGCAGggGAgcgaGCCCgC-CCGCGa-- -3'
miRNA:   3'- aCCUGUCuuUUg---CGGG-GaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 22772 0.79 0.327504
Target:  5'- aGGACGGggGACGUCuCCgggCCGCGgcGg -3'
miRNA:   3'- aCCUGUCuuUUGCGG-GGa--GGCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 22862 0.66 0.944956
Target:  5'- cGGACcGu---CGCCCCgCCGCGcGGc -3'
miRNA:   3'- aCCUGuCuuuuGCGGGGaGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 23907 0.69 0.843102
Target:  5'- cGGGCccgguucgAGGccucGGGCGCCCCggcgcCCGUGUGGg -3'
miRNA:   3'- aCCUG--------UCU----UUUGCGGGGa----GGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 24487 0.67 0.924603
Target:  5'- gGGGCGccuGAGCGCCgcgcccgCCUCCGCGc-- -3'
miRNA:   3'- aCCUGUcu-UUUGCGG-------GGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 25259 0.66 0.944956
Target:  5'- aGGGCGGcuGGCGCCgCCagCCGCcgGGg -3'
miRNA:   3'- aCCUGUCuuUUGCGG-GGa-GGCGcaUC- -5'
5303 3' -54.7 NC_001798.1 + 28195 0.67 0.925148
Target:  5'- aGGGCGGGgggaaggcgccGGAgGCCCCgcacgCCGCGc-- -3'
miRNA:   3'- aCCUGUCU-----------UUUgCGGGGa----GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 29218 0.72 0.693668
Target:  5'- cGGACGGccccuCGCUCC-CCGCGUAa -3'
miRNA:   3'- aCCUGUCuuuu-GCGGGGaGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 29844 0.66 0.944956
Target:  5'- cGGugAGAGGGCGaCCC-CCGgGUc- -3'
miRNA:   3'- aCCugUCUUUUGCgGGGaGGCgCAuc -5'
5303 3' -54.7 NC_001798.1 + 30736 0.69 0.843102
Target:  5'- -cGAUAGuGAACGaCCCCcggacCCGCGUGGa -3'
miRNA:   3'- acCUGUCuUUUGC-GGGGa----GGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 31393 0.78 0.37461
Target:  5'- aGGGCAGG--ACGCCCC-CCGCG-AGa -3'
miRNA:   3'- aCCUGUCUuuUGCGGGGaGGCGCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.