miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 18049 1.09 0.004116
Target:  5'- aUGGACAGAAAACGCCCCUCCGCGUAGu -3'
miRNA:   3'- -ACCUGUCUUUUGCGGGGAGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 22772 0.79 0.327504
Target:  5'- aGGACGGggGACGUCuCCgggCCGCGgcGg -3'
miRNA:   3'- aCCUGUCuuUUGCGG-GGa--GGCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 31393 0.78 0.37461
Target:  5'- aGGGCAGG--ACGCCCC-CCGCG-AGa -3'
miRNA:   3'- aCCUGUCUuuUGCGGGGaGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 147184 0.77 0.408467
Target:  5'- cGGGCGGAAGGCGUCCC-CCGCc--- -3'
miRNA:   3'- aCCUGUCUUUUGCGGGGaGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 2538 0.75 0.500821
Target:  5'- gGGGCGGggGGCGCggCCC-CCGCGggagGGg -3'
miRNA:   3'- aCCUGUCuuUUGCG--GGGaGGCGCa---UC- -5'
5303 3' -54.7 NC_001798.1 + 150171 0.74 0.550337
Target:  5'- gGGGCGGGccgcCGcCCCCUCCGCGgcGu -3'
miRNA:   3'- aCCUGUCUuuu-GC-GGGGAGGCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 44485 0.73 0.611534
Target:  5'- aUGGGCcGGGuGCGCCCUUUCGgGUGGu -3'
miRNA:   3'- -ACCUGuCUUuUGCGGGGAGGCgCAUC- -5'
5303 3' -54.7 NC_001798.1 + 146499 0.73 0.64244
Target:  5'- cGGGCcGgcAACGCCCCgcgccggCCGCGgcGg -3'
miRNA:   3'- aCCUGuCuuUUGCGGGGa------GGCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 34856 0.73 0.64244
Target:  5'- cGGGCGGggGACGCC-UUCCGCc--- -3'
miRNA:   3'- aCCUGUCuuUUGCGGgGAGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 88367 0.72 0.672246
Target:  5'- cGGGCAGggGucGCGCCagccacuCCUCUGCGg-- -3'
miRNA:   3'- aCCUGUCuuU--UGCGG-------GGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 93252 0.72 0.693668
Target:  5'- aGGGcCAGGAAACGCCCgCggcCCGCGc-- -3'
miRNA:   3'- aCCU-GUCUUUUGCGGG-Ga--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 29218 0.72 0.693668
Target:  5'- cGGACGGccccuCGCUCC-CCGCGUAa -3'
miRNA:   3'- aCCUGUCuuuu-GCGGGGaGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 20775 0.71 0.713857
Target:  5'- gGGAgcGAcgGCGCCCg-CCGCGUAGg -3'
miRNA:   3'- aCCUguCUuuUGCGGGgaGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 64367 0.71 0.733764
Target:  5'- gUGGagGCGGGGAGCGUCCCgUCCGCc--- -3'
miRNA:   3'- -ACC--UGUCUUUUGCGGGG-AGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 122367 0.71 0.743587
Target:  5'- gGGGCGGgcGACGCgCCCgccccCCGCGg-- -3'
miRNA:   3'- aCCUGUCuuUUGCG-GGGa----GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 43337 0.71 0.753312
Target:  5'- gGGGCGGcAGugcCGCCCC-CCGCGUc- -3'
miRNA:   3'- aCCUGUCuUUu--GCGGGGaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 128836 0.7 0.761973
Target:  5'- cGGACccc-GGCGCCCCcgcggccUCCGCGUAc -3'
miRNA:   3'- aCCUGucuuUUGCGGGG-------AGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 151213 0.7 0.762929
Target:  5'- aGcGACAGGGAGCGCggggCCgUCCGCGg-- -3'
miRNA:   3'- aC-CUGUCUUUUGCG----GGgAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 16186 0.7 0.762929
Target:  5'- gGGACcgGGggGACGCacgggccgCCCUCCGCa--- -3'
miRNA:   3'- aCCUG--UCuuUUGCG--------GGGAGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 52725 0.7 0.781801
Target:  5'- uUGGGCGGAcguGCGCgCCgCCGCGg-- -3'
miRNA:   3'- -ACCUGUCUuu-UGCGgGGaGGCGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.