miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 153763 0.7 0.794691
Target:  5'- gGGGCGGAAGggggcgcugcggcccGCGCUCCUUgCGCGgcGg -3'
miRNA:   3'- aCCUGUCUUU---------------UGCGGGGAG-GCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 41525 0.7 0.800127
Target:  5'- aGGGCGGuaucguuguGCGCCCCggcggggcgcaCCGCGUAa -3'
miRNA:   3'- aCCUGUCuuu------UGCGGGGa----------GGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 20016 0.7 0.800127
Target:  5'- cGGcCGGGGAGgGCCCCcccUCCGUGUcGGa -3'
miRNA:   3'- aCCuGUCUUUUgCGGGG---AGGCGCA-UC- -5'
5303 3' -54.7 NC_001798.1 + 80557 0.7 0.800127
Target:  5'- gGGGCGcGAGGCGUCCCUCCcCG-AGg -3'
miRNA:   3'- aCCUGUcUUUUGCGGGGAGGcGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 51185 0.7 0.809064
Target:  5'- cGGGCGGc-GGCGCCCCcCCGCc--- -3'
miRNA:   3'- aCCUGUCuuUUGCGGGGaGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 39416 0.69 0.817838
Target:  5'- gGGAcCGGGGcGCGgCCgUCCGCGUGc -3'
miRNA:   3'- aCCU-GUCUUuUGCgGGgAGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 138775 0.69 0.823879
Target:  5'- gGGGCAGcgugugcugccugaGAAACGCCCCcaggcgCUGCGUc- -3'
miRNA:   3'- aCCUGUC--------------UUUUGCGGGGa-----GGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 101966 0.69 0.838183
Target:  5'- cGGAUAGAGGAgGCCCCgggggggcgaugugCgGCGgcGg -3'
miRNA:   3'- aCCUGUCUUUUgCGGGGa-------------GgCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 30736 0.69 0.843102
Target:  5'- -cGAUAGuGAACGaCCCCcggacCCGCGUGGa -3'
miRNA:   3'- acCUGUCuUUUGC-GGGGa----GGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 117744 0.69 0.843102
Target:  5'- cGGcCAGAGcgacccGGCGCgCCCUUCGCGg-- -3'
miRNA:   3'- aCCuGUCUU------UUGCG-GGGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 23907 0.69 0.843102
Target:  5'- cGGGCccgguucgAGGccucGGGCGCCCCggcgcCCGUGUGGg -3'
miRNA:   3'- aCCUG--------UCU----UUUGCGGGGa----GGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 69217 0.69 0.850349
Target:  5'- aGGGCcaaaaGGAGCGCCCCggccggcUCCGCGUu- -3'
miRNA:   3'- aCCUGuc---UUUUGCGGGG-------AGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 39502 0.69 0.851145
Target:  5'- cGGGCccccGGAGACGucgagcugcuCCCCUCCGCGc-- -3'
miRNA:   3'- aCCUGu---CUUUUGC----------GGGGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 52297 0.69 0.851145
Target:  5'- gUGGAgCAGGAGGCGCUgUUUCGCGc-- -3'
miRNA:   3'- -ACCU-GUCUUUUGCGGgGAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 142960 0.68 0.858986
Target:  5'- cGGGCAGAGc-CGCCCauccgaggaCCGCGUGu -3'
miRNA:   3'- aCCUGUCUUuuGCGGGga-------GGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 85223 0.68 0.865865
Target:  5'- aGGACGuGGAGAgcgacgucgcgccCGCCCCcCCGCGg-- -3'
miRNA:   3'- aCCUGU-CUUUU-------------GCGGGGaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 36104 0.68 0.866619
Target:  5'- gUGGugGGggGGgGCCCggCUGCGUc- -3'
miRNA:   3'- -ACCugUCuuUUgCGGGgaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 22199 0.68 0.866619
Target:  5'- aGGGCAGggGAgcgaGCCCgC-CCGCGa-- -3'
miRNA:   3'- aCCUGUCuuUUg---CGGG-GaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 103257 0.68 0.866619
Target:  5'- aGGuACAGcAGACGCUCCUCC-CGggAGa -3'
miRNA:   3'- aCC-UGUCuUUUGCGGGGAGGcGCa-UC- -5'
5303 3' -54.7 NC_001798.1 + 18265 0.68 0.866619
Target:  5'- gGGGcCAGGu-ACGCaUCCUCCGCGgGGg -3'
miRNA:   3'- aCCU-GUCUuuUGCG-GGGAGGCGCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.