miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 146740 0.67 0.921843
Target:  5'- cGGAgauccauuaagccgcCGGAGAGCccgaGCCCCgcCCGCGUGu -3'
miRNA:   3'- aCCU---------------GUCUUUUG----CGGGGa-GGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 103192 0.67 0.919591
Target:  5'- cGGGCGGAAccuCGUCCCcCCgGCGUu- -3'
miRNA:   3'- aCCUGUCUUuu-GCGGGGaGG-CGCAuc -5'
5303 3' -54.7 NC_001798.1 + 68926 0.67 0.919591
Target:  5'- aGGcauuCGGAAAaccgguccagccGCGCCCCggcCCGCGUc- -3'
miRNA:   3'- aCCu---GUCUUU------------UGCGGGGa--GGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 126852 0.67 0.913792
Target:  5'- cGGcCAGcuGGCGUCCCUgCGCGc-- -3'
miRNA:   3'- aCCuGUCuuUUGCGGGGAgGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 36640 0.67 0.907753
Target:  5'- cGGGCGGggGcGCGCUuuCC-CCGCGUc- -3'
miRNA:   3'- aCCUGUCuuU-UGCGG--GGaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 97436 0.67 0.907753
Target:  5'- gUGcGACgAGGAGGCGCUgCgCCGCGUGc -3'
miRNA:   3'- -AC-CUG-UCUUUUGCGGgGaGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 130203 0.67 0.907753
Target:  5'- gUGGugGGAc-ACGCUCgcguaggggguUUCCGCGUAGc -3'
miRNA:   3'- -ACCugUCUuuUGCGGG-----------GAGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 67605 0.67 0.907753
Target:  5'- cGGACGGAGAccGCGCUCCg--GCGaGGg -3'
miRNA:   3'- aCCUGUCUUU--UGCGGGGaggCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 15200 0.67 0.901475
Target:  5'- gGGGCuggcgagccggGGGGAGCGUCCgCgggUCCGUGUGGg -3'
miRNA:   3'- aCCUG-----------UCUUUUGCGGG-G---AGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 15615 0.67 0.901475
Target:  5'- cGGGCGGGGAGgcgacUGCCguuuCCUCCgGCGUAa -3'
miRNA:   3'- aCCUGUCUUUU-----GCGG----GGAGG-CGCAUc -5'
5303 3' -54.7 NC_001798.1 + 51515 0.67 0.901475
Target:  5'- cUGGACcGccuGACcCCCCgagucgCCGCGUGGg -3'
miRNA:   3'- -ACCUGuCuu-UUGcGGGGa-----GGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 113823 0.67 0.901475
Target:  5'- gGGACAGAGGACGCCggCCggUCCuCGg-- -3'
miRNA:   3'- aCCUGUCUUUUGCGG--GG--AGGcGCauc -5'
5303 3' -54.7 NC_001798.1 + 47883 0.67 0.901475
Target:  5'- cGGGCGcucgcACGCCCCUccCCGCGg-- -3'
miRNA:   3'- aCCUGUcuuu-UGCGGGGA--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 55015 0.67 0.901475
Target:  5'- gGGGCcgcccugccGGGAGACGCCCCggacUCCcCGUAc -3'
miRNA:   3'- aCCUG---------UCUUUUGCGGGG----AGGcGCAUc -5'
5303 3' -54.7 NC_001798.1 + 91777 0.67 0.900834
Target:  5'- aGGGCGGcc-ACGCCCCcugCCgaugacgcgcgggGCGUGGg -3'
miRNA:   3'- aCCUGUCuuuUGCGGGGa--GG-------------CGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 91104 0.68 0.894961
Target:  5'- gUGGACcccGGu--GCGCUgCUCCGCGgGGg -3'
miRNA:   3'- -ACCUG---UCuuuUGCGGgGAGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 146430 0.68 0.894961
Target:  5'- cGGGCAGAGugcggaGCCCCcggagcCCGCGg-- -3'
miRNA:   3'- aCCUGUCUUuug---CGGGGa-----GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 51755 0.68 0.888214
Target:  5'- cGGGCA-AAAACcaGCCCCUcCCGCGcgaUGGg -3'
miRNA:   3'- aCCUGUcUUUUG--CGGGGA-GGCGC---AUC- -5'
5303 3' -54.7 NC_001798.1 + 147532 0.68 0.888214
Target:  5'- cGuGugAGAGAgcGCGCCCCUCgaacgccgCGCGUu- -3'
miRNA:   3'- aC-CugUCUUU--UGCGGGGAG--------GCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 70001 0.68 0.888214
Target:  5'- cGGGC-GAuacuuaGCCCCUCCGUaUAGg -3'
miRNA:   3'- aCCUGuCUuuug--CGGGGAGGCGcAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.