miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 153875 0.66 0.944956
Target:  5'- gGGGCuGuu--CGCCCaCUCUGCGUc- -3'
miRNA:   3'- aCCUGuCuuuuGCGGG-GAGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 153763 0.7 0.794691
Target:  5'- gGGGCGGAAGggggcgcugcggcccGCGCUCCUUgCGCGgcGg -3'
miRNA:   3'- aCCUGUCUUU---------------UGCGGGGAG-GCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 153644 0.67 0.925148
Target:  5'- cGGAgGGGAGGCGUaCCUUcCCGCGcGGc -3'
miRNA:   3'- aCCUgUCUUUUGCG-GGGA-GGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 151213 0.7 0.762929
Target:  5'- aGcGACAGGGAGCGCggggCCgUCCGCGg-- -3'
miRNA:   3'- aC-CUGUCUUUUGCG----GGgAGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 150171 0.74 0.550337
Target:  5'- gGGGCGGGccgcCGcCCCCUCCGCGgcGu -3'
miRNA:   3'- aCCUGUCUuuu-GC-GGGGAGGCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 147532 0.68 0.888214
Target:  5'- cGuGugAGAGAgcGCGCCCCUCgaacgccgCGCGUu- -3'
miRNA:   3'- aC-CugUCUUU--UGCGGGGAG--------GCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 147184 0.77 0.408467
Target:  5'- cGGGCGGAAGGCGUCCC-CCGCc--- -3'
miRNA:   3'- aCCUGUCUUUUGCGGGGaGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 146740 0.67 0.921843
Target:  5'- cGGAgauccauuaagccgcCGGAGAGCccgaGCCCCgcCCGCGUGu -3'
miRNA:   3'- aCCU---------------GUCUUUUG----CGGGGa-GGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 146499 0.73 0.64244
Target:  5'- cGGGCcGgcAACGCCCCgcgccggCCGCGgcGg -3'
miRNA:   3'- aCCUGuCuuUUGCGGGGa------GGCGCauC- -5'
5303 3' -54.7 NC_001798.1 + 146430 0.68 0.894961
Target:  5'- cGGGCAGAGugcggaGCCCCcggagcCCGCGg-- -3'
miRNA:   3'- aCCUGUCUUuug---CGGGGa-----GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 145643 0.68 0.866619
Target:  5'- -cGGCAGggGG-GCCCCggcgCCGCGcAGa -3'
miRNA:   3'- acCUGUCuuUUgCGGGGa---GGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 142960 0.68 0.858986
Target:  5'- cGGGCAGAGc-CGCCCauccgaggaCCGCGUGu -3'
miRNA:   3'- aCCUGUCUUuuGCGGGga-------GGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 138775 0.69 0.823879
Target:  5'- gGGGCAGcgugugcugccugaGAAACGCCCCcaggcgCUGCGUc- -3'
miRNA:   3'- aCCUGUC--------------UUUUGCGGGGa-----GGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 132159 0.66 0.944956
Target:  5'- cGGGCGGG--GCGCCCCcCC-CGg-- -3'
miRNA:   3'- aCCUGUCUuuUGCGGGGaGGcGCauc -5'
5303 3' -54.7 NC_001798.1 + 131548 0.66 0.930462
Target:  5'- cGGACGc-GAGCGCCCCgacggCCcgguGCGUAa -3'
miRNA:   3'- aCCUGUcuUUUGCGGGGa----GG----CGCAUc -5'
5303 3' -54.7 NC_001798.1 + 130203 0.67 0.907753
Target:  5'- gUGGugGGAc-ACGCUCgcguaggggguUUCCGCGUAGc -3'
miRNA:   3'- -ACCugUCUuuUGCGGG-----------GAGGCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 128836 0.7 0.761973
Target:  5'- cGGACccc-GGCGCCCCcgcggccUCCGCGUAc -3'
miRNA:   3'- aCCUGucuuUUGCGGGG-------AGGCGCAUc -5'
5303 3' -54.7 NC_001798.1 + 126852 0.67 0.913792
Target:  5'- cGGcCAGcuGGCGUCCCUgCGCGc-- -3'
miRNA:   3'- aCCuGUCuuUUGCGGGGAgGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 122367 0.71 0.743587
Target:  5'- gGGGCGGgcGACGCgCCCgccccCCGCGg-- -3'
miRNA:   3'- aCCUGUCuuUUGCG-GGGa----GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 117744 0.69 0.843102
Target:  5'- cGGcCAGAGcgacccGGCGCgCCCUUCGCGg-- -3'
miRNA:   3'- aCCuGUCUU------UUGCG-GGGAGGCGCauc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.