miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 5' -58.1 NC_001798.1 + 2525 0.66 0.843903
Target:  5'- cGGCgGCGUCGg-CGGGGCGgggggCG-CGg -3'
miRNA:   3'- -CCGgUGCAGUagGCCCCGCa----GUaGCa -5'
5303 5' -58.1 NC_001798.1 + 2569 0.7 0.62058
Target:  5'- cGGCCGCGgggCGg--GGGGCGUCcgCGc -3'
miRNA:   3'- -CCGGUGCa--GUaggCCCCGCAGuaGCa -5'
5303 5' -58.1 NC_001798.1 + 3330 0.71 0.551405
Target:  5'- cGGCgGCGggCuucCCGcGGGCGUCGUCGc -3'
miRNA:   3'- -CCGgUGCa-Gua-GGC-CCCGCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 3378 0.66 0.859245
Target:  5'- cGCCGcCGUCGUCgGGGGUucgcgccccgGUCAgcgccgCGUu -3'
miRNA:   3'- cCGGU-GCAGUAGgCCCCG----------CAGUa-----GCA- -5'
5303 5' -58.1 NC_001798.1 + 4439 0.66 0.839155
Target:  5'- uGGCCAUGggGUCCGGGuacgccccgcggaccGCGgaCGUCGUc -3'
miRNA:   3'- -CCGGUGCagUAGGCCC---------------CGCa-GUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 4754 0.74 0.402715
Target:  5'- gGGCCGCcUCGUCggcaucggcaucggCGGcGGCGUCGUCGg -3'
miRNA:   3'- -CCGGUGcAGUAG--------------GCC-CCGCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 4881 0.66 0.82536
Target:  5'- cGGUC-CGUCGgcuggauccggagaUCCGGGGCcgccgGUCGUCu- -3'
miRNA:   3'- -CCGGuGCAGU--------------AGGCCCCG-----CAGUAGca -5'
5303 5' -58.1 NC_001798.1 + 17340 0.67 0.775804
Target:  5'- cGGCCAgGaCcUCgGGGGCGUUuguAUCGa -3'
miRNA:   3'- -CCGGUgCaGuAGgCCCCGCAG---UAGCa -5'
5303 5' -58.1 NC_001798.1 + 18086 1.09 0.002296
Target:  5'- aGGCCACGUCAUCCGGGGCGUCAUCGUc -3'
miRNA:   3'- -CCGGUGCAGUAGGCCCCGCAGUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 22966 0.71 0.580856
Target:  5'- cGGCCcCGgCGUCCGGGGagGcCGUCGa -3'
miRNA:   3'- -CCGGuGCaGUAGGCCCCg-CaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 26006 0.69 0.699937
Target:  5'- cGGCCGCGuguUCGggCCGGGG-GUCuUCGc -3'
miRNA:   3'- -CCGGUGC---AGUa-GGCCCCgCAGuAGCa -5'
5303 5' -58.1 NC_001798.1 + 28672 0.66 0.843903
Target:  5'- cGCCGCGUggCGgcggCCGaGGCGgUCAUCGg -3'
miRNA:   3'- cCGGUGCA--GUa---GGCcCCGC-AGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 31558 0.66 0.843903
Target:  5'- uGCCACaGUCGU-CGGGGCGcgCcgCGc -3'
miRNA:   3'- cCGGUG-CAGUAgGCCCCGCa-GuaGCa -5'
5303 5' -58.1 NC_001798.1 + 32038 0.69 0.681248
Target:  5'- cGGCCACGggccgcucgccccggCGUCCGcGGGCGccgcgccccCGUCGg -3'
miRNA:   3'- -CCGGUGCa--------------GUAGGC-CCCGCa--------GUAGCa -5'
5303 5' -58.1 NC_001798.1 + 42616 0.7 0.61062
Target:  5'- cGGCCuCGUCGUCCgggagGGGGcCGUgGgUCGUg -3'
miRNA:   3'- -CCGGuGCAGUAGG-----CCCC-GCAgU-AGCA- -5'
5303 5' -58.1 NC_001798.1 + 43255 0.7 0.630549
Target:  5'- aGCCGCGaUCGcCgGGGGCGUCGUg-- -3'
miRNA:   3'- cCGGUGC-AGUaGgCCCCGCAGUAgca -5'
5303 5' -58.1 NC_001798.1 + 43355 0.67 0.811084
Target:  5'- -cCCGCGUCGUccCCGGGG-GUUGUUGg -3'
miRNA:   3'- ccGGUGCAGUA--GGCCCCgCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 43530 0.66 0.851668
Target:  5'- cGGCCGCGUCucccgCCaGGGCGguuUCc- -3'
miRNA:   3'- -CCGGUGCAGua---GGcCCCGCaguAGca -5'
5303 5' -58.1 NC_001798.1 + 52172 0.72 0.541686
Target:  5'- aGGCCGCGUUug-CGGGGCG-CGUCc- -3'
miRNA:   3'- -CCGGUGCAGuagGCCCCGCaGUAGca -5'
5303 5' -58.1 NC_001798.1 + 53152 0.66 0.866626
Target:  5'- cGGCCAaccUCAUCCGcggcgccaacgcGGGCGUCccCGa -3'
miRNA:   3'- -CCGGUgc-AGUAGGC------------CCCGCAGuaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.