miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 5' -58.1 NC_001798.1 + 18086 1.09 0.002296
Target:  5'- aGGCCACGUCAUCCGGGGCGUCAUCGUc -3'
miRNA:   3'- -CCGGUGCAGUAGGCCCCGCAGUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 87771 0.85 0.087608
Target:  5'- cGGCCACGUCGUCCGGGGgGUgccaCGUCu- -3'
miRNA:   3'- -CCGGUGCAGUAGGCCCCgCA----GUAGca -5'
5303 5' -58.1 NC_001798.1 + 58552 0.78 0.248894
Target:  5'- uGGCCgcucgGCGUCcUCCGGGGCGU-AUCGg -3'
miRNA:   3'- -CCGG-----UGCAGuAGGCCCCGCAgUAGCa -5'
5303 5' -58.1 NC_001798.1 + 4754 0.74 0.402715
Target:  5'- gGGCCGCcUCGUCggcaucggcaucggCGGcGGCGUCGUCGg -3'
miRNA:   3'- -CCGGUGcAGUAG--------------GCC-CCGCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 130130 0.74 0.42219
Target:  5'- cGGCCuCGUgGUCgGGGGCcacuUCGUCGUa -3'
miRNA:   3'- -CCGGuGCAgUAGgCCCCGc---AGUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 115504 0.73 0.448422
Target:  5'- aGGCCGCGaaucCGUaCGGGGCGUaCGUCGc -3'
miRNA:   3'- -CCGGUGCa---GUAgGCCCCGCA-GUAGCa -5'
5303 5' -58.1 NC_001798.1 + 104550 0.73 0.451988
Target:  5'- gGGCCACGUCGUCgGGguucacgcgggugcuGGUGUC-UCGg -3'
miRNA:   3'- -CCGGUGCAGUAGgCC---------------CCGCAGuAGCa -5'
5303 5' -58.1 NC_001798.1 + 135798 0.72 0.503434
Target:  5'- aGGCCGUGUgCGcggcCCGGGGCGUCAUgGa -3'
miRNA:   3'- -CCGGUGCA-GUa---GGCCCCGCAGUAgCa -5'
5303 5' -58.1 NC_001798.1 + 110521 0.72 0.532024
Target:  5'- uGGCCGCGUCcgcgCUGGGG-GUCGUUa- -3'
miRNA:   3'- -CCGGUGCAGua--GGCCCCgCAGUAGca -5'
5303 5' -58.1 NC_001798.1 + 85025 0.72 0.541686
Target:  5'- uGGCgACGUCcgCCccgGGGGUGcCGUCGa -3'
miRNA:   3'- -CCGgUGCAGuaGG---CCCCGCaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 52172 0.72 0.541686
Target:  5'- aGGCCGCGUUug-CGGGGCG-CGUCc- -3'
miRNA:   3'- -CCGGUGCAGuagGCCCCGCaGUAGca -5'
5303 5' -58.1 NC_001798.1 + 100063 0.71 0.551405
Target:  5'- cGCCACGUgaaugaCAUgCUGGGGCG-CAUCGc -3'
miRNA:   3'- cCGGUGCA------GUA-GGCCCCGCaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 3330 0.71 0.551405
Target:  5'- cGGCgGCGggCuucCCGcGGGCGUCGUCGc -3'
miRNA:   3'- -CCGgUGCa-Gua-GGC-CCCGCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 22966 0.71 0.580856
Target:  5'- cGGCCcCGgCGUCCGGGGagGcCGUCGa -3'
miRNA:   3'- -CCGGuGCaGUAGGCCCCg-CaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 117772 0.71 0.580856
Target:  5'- cGGCCACGgccaacCCGuGGGCGUCGcagcgguucUCGUa -3'
miRNA:   3'- -CCGGUGCagua--GGC-CCCGCAGU---------AGCA- -5'
5303 5' -58.1 NC_001798.1 + 66752 0.71 0.590751
Target:  5'- cGCCACGUCcgCCuGGGGUG-CGgcggCGUg -3'
miRNA:   3'- cCGGUGCAGuaGG-CCCCGCaGUa---GCA- -5'
5303 5' -58.1 NC_001798.1 + 42616 0.7 0.61062
Target:  5'- cGGCCuCGUCGUCCgggagGGGGcCGUgGgUCGUg -3'
miRNA:   3'- -CCGGuGCAGUAGG-----CCCC-GCAgU-AGCA- -5'
5303 5' -58.1 NC_001798.1 + 2569 0.7 0.62058
Target:  5'- cGGCCGCGgggCGg--GGGGCGUCcgCGc -3'
miRNA:   3'- -CCGGUGCa--GUaggCCCCGCAGuaGCa -5'
5303 5' -58.1 NC_001798.1 + 43255 0.7 0.630549
Target:  5'- aGCCGCGaUCGcCgGGGGCGUCGUg-- -3'
miRNA:   3'- cCGGUGC-AGUaGgCCCCGCAGUAgca -5'
5303 5' -58.1 NC_001798.1 + 32038 0.69 0.681248
Target:  5'- cGGCCACGggccgcucgccccggCGUCCGcGGGCGccgcgccccCGUCGg -3'
miRNA:   3'- -CCGGUGCa--------------GUAGGC-CCCGCa--------GUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.