Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5303 | 5' | -58.1 | NC_001798.1 | + | 130080 | 0.69 | 0.690122 |
Target: 5'- gGGCUcgGCGUCGggcacaggcCCGGGGCGUUGcacUCGg -3' miRNA: 3'- -CCGG--UGCAGUa--------GGCCCCGCAGU---AGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 26006 | 0.69 | 0.699937 |
Target: 5'- cGGCCGCGuguUCGggCCGGGG-GUCuUCGc -3' miRNA: 3'- -CCGGUGC---AGUa-GGCCCCgCAGuAGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 113968 | 0.69 | 0.699937 |
Target: 5'- aGUCGCGUCcgCCGGcGGUGaggCGUUGUg -3' miRNA: 3'- cCGGUGCAGuaGGCC-CCGCa--GUAGCA- -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 69828 | 0.69 | 0.708725 |
Target: 5'- cGGCCGCGauacacuUgGUCCGGGcCGcCGUCGg -3' miRNA: 3'- -CCGGUGC-------AgUAGGCCCcGCaGUAGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 93478 | 0.68 | 0.726146 |
Target: 5'- gGGCCACGUgGUgCCcggguacgaGGGGCGccccacggcgccccUCGUCGg -3' miRNA: 3'- -CCGGUGCAgUA-GG---------CCCCGC--------------AGUAGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 135628 | 0.68 | 0.735719 |
Target: 5'- -cCCACGUCGUcaccuggagccagaCCGGGGCGUgGUUc- -3' miRNA: 3'- ccGGUGCAGUA--------------GGCCCCGCAgUAGca -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 72582 | 0.68 | 0.738574 |
Target: 5'- uGGUCGCGUCccUCgCGGGGCugcgguccGUCGUCa- -3' miRNA: 3'- -CCGGUGCAGu-AG-GCCCCG--------CAGUAGca -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 128586 | 0.68 | 0.738574 |
Target: 5'- gGGCCGCG-CGgaCGcGGGCGUCAaCGa -3' miRNA: 3'- -CCGGUGCaGUagGC-CCCGCAGUaGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 76917 | 0.68 | 0.738574 |
Target: 5'- uGGCCgAUGcCGUCCGGGGCccccccccggaaGUCA-CGg -3' miRNA: 3'- -CCGG-UGCaGUAGGCCCCG------------CAGUaGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 129520 | 0.68 | 0.748035 |
Target: 5'- gGGCCucGCGUUcUCCGGGGCG-CGg--- -3' miRNA: 3'- -CCGG--UGCAGuAGGCCCCGCaGUagca -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 17340 | 0.67 | 0.775804 |
Target: 5'- cGGCCAgGaCcUCgGGGGCGUUuguAUCGa -3' miRNA: 3'- -CCGGUgCaGuAGgCCCCGCAG---UAGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 133292 | 0.67 | 0.788401 |
Target: 5'- uGGCCGCGugccugcagugggacUCGauggCCGGGGgGUCGgggCGa -3' miRNA: 3'- -CCGGUGC---------------AGUa---GGCCCCgCAGUa--GCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 96677 | 0.67 | 0.790179 |
Target: 5'- cGGCCGCGcuggagcgCGUCCGGgaguuuaugguggcGGCGguggggucgggccUCAUCGUg -3' miRNA: 3'- -CCGGUGCa-------GUAGGCC--------------CCGC-------------AGUAGCA- -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 116670 | 0.67 | 0.79372 |
Target: 5'- uGGCCAacacgGUCAagcgcauguUCCacaacGGGcGCGUCGUCGUc -3' miRNA: 3'- -CCGGUg----CAGU---------AGG-----CCC-CGCAGUAGCA- -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 43355 | 0.67 | 0.811084 |
Target: 5'- -cCCGCGUCGUccCCGGGG-GUUGUUGg -3' miRNA: 3'- ccGGUGCAGUA--GGCCCCgCAGUAGCa -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 86335 | 0.67 | 0.819538 |
Target: 5'- uGGCCAUGcgaCGcCUGaGGGCGUcCGUCGUc -3' miRNA: 3'- -CCGGUGCa--GUaGGC-CCCGCA-GUAGCA- -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 91117 | 0.67 | 0.819538 |
Target: 5'- cGCUGC-UCcgCgGGGGCGUCcUCGUc -3' miRNA: 3'- cCGGUGcAGuaGgCCCCGCAGuAGCA- -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 4881 | 0.66 | 0.82536 |
Target: 5'- cGGUC-CGUCGgcuggauccggagaUCCGGGGCcgccgGUCGUCu- -3' miRNA: 3'- -CCGGuGCAGU--------------AGGCCCCG-----CAGUAGca -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 65072 | 0.66 | 0.835955 |
Target: 5'- uGCCGCGggugCA-CUGGGGCGUgGgUUGUa -3' miRNA: 3'- cCGGUGCa---GUaGGCCCCGCAgU-AGCA- -5' |
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5303 | 5' | -58.1 | NC_001798.1 | + | 4439 | 0.66 | 0.839155 |
Target: 5'- uGGCCAUGggGUCCGGGuacgccccgcggaccGCGgaCGUCGUc -3' miRNA: 3'- -CCGGUGCagUAGGCCC---------------CGCa-GUAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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