miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 5' -58.1 NC_001798.1 + 129520 0.68 0.748035
Target:  5'- gGGCCucGCGUUcUCCGGGGCG-CGg--- -3'
miRNA:   3'- -CCGG--UGCAGuAGGCCCCGCaGUagca -5'
5303 5' -58.1 NC_001798.1 + 128586 0.68 0.738574
Target:  5'- gGGCCGCG-CGgaCGcGGGCGUCAaCGa -3'
miRNA:   3'- -CCGGUGCaGUagGC-CCCGCAGUaGCa -5'
5303 5' -58.1 NC_001798.1 + 76917 0.68 0.738574
Target:  5'- uGGCCgAUGcCGUCCGGGGCccccccccggaaGUCA-CGg -3'
miRNA:   3'- -CCGG-UGCaGUAGGCCCCG------------CAGUaGCa -5'
5303 5' -58.1 NC_001798.1 + 72582 0.68 0.738574
Target:  5'- uGGUCGCGUCccUCgCGGGGCugcgguccGUCGUCa- -3'
miRNA:   3'- -CCGGUGCAGu-AG-GCCCCG--------CAGUAGca -5'
5303 5' -58.1 NC_001798.1 + 135628 0.68 0.735719
Target:  5'- -cCCACGUCGUcaccuggagccagaCCGGGGCGUgGUUc- -3'
miRNA:   3'- ccGGUGCAGUA--------------GGCCCCGCAgUAGca -5'
5303 5' -58.1 NC_001798.1 + 93478 0.68 0.726146
Target:  5'- gGGCCACGUgGUgCCcggguacgaGGGGCGccccacggcgccccUCGUCGg -3'
miRNA:   3'- -CCGGUGCAgUA-GG---------CCCCGC--------------AGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 69828 0.69 0.708725
Target:  5'- cGGCCGCGauacacuUgGUCCGGGcCGcCGUCGg -3'
miRNA:   3'- -CCGGUGC-------AgUAGGCCCcGCaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 113968 0.69 0.699937
Target:  5'- aGUCGCGUCcgCCGGcGGUGaggCGUUGUg -3'
miRNA:   3'- cCGGUGCAGuaGGCC-CCGCa--GUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 26006 0.69 0.699937
Target:  5'- cGGCCGCGuguUCGggCCGGGG-GUCuUCGc -3'
miRNA:   3'- -CCGGUGC---AGUa-GGCCCCgCAGuAGCa -5'
5303 5' -58.1 NC_001798.1 + 130080 0.69 0.690122
Target:  5'- gGGCUcgGCGUCGggcacaggcCCGGGGCGUUGcacUCGg -3'
miRNA:   3'- -CCGG--UGCAGUa--------GGCCCCGCAGU---AGCa -5'
5303 5' -58.1 NC_001798.1 + 32038 0.69 0.681248
Target:  5'- cGGCCACGggccgcucgccccggCGUCCGcGGGCGccgcgccccCGUCGg -3'
miRNA:   3'- -CCGGUGCa--------------GUAGGC-CCCGCa--------GUAGCa -5'
5303 5' -58.1 NC_001798.1 + 43255 0.7 0.630549
Target:  5'- aGCCGCGaUCGcCgGGGGCGUCGUg-- -3'
miRNA:   3'- cCGGUGC-AGUaGgCCCCGCAGUAgca -5'
5303 5' -58.1 NC_001798.1 + 2569 0.7 0.62058
Target:  5'- cGGCCGCGgggCGg--GGGGCGUCcgCGc -3'
miRNA:   3'- -CCGGUGCa--GUaggCCCCGCAGuaGCa -5'
5303 5' -58.1 NC_001798.1 + 42616 0.7 0.61062
Target:  5'- cGGCCuCGUCGUCCgggagGGGGcCGUgGgUCGUg -3'
miRNA:   3'- -CCGGuGCAGUAGG-----CCCC-GCAgU-AGCA- -5'
5303 5' -58.1 NC_001798.1 + 66752 0.71 0.590751
Target:  5'- cGCCACGUCcgCCuGGGGUG-CGgcggCGUg -3'
miRNA:   3'- cCGGUGCAGuaGG-CCCCGCaGUa---GCA- -5'
5303 5' -58.1 NC_001798.1 + 117772 0.71 0.580856
Target:  5'- cGGCCACGgccaacCCGuGGGCGUCGcagcgguucUCGUa -3'
miRNA:   3'- -CCGGUGCagua--GGC-CCCGCAGU---------AGCA- -5'
5303 5' -58.1 NC_001798.1 + 22966 0.71 0.580856
Target:  5'- cGGCCcCGgCGUCCGGGGagGcCGUCGa -3'
miRNA:   3'- -CCGGuGCaGUAGGCCCCg-CaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 100063 0.71 0.551405
Target:  5'- cGCCACGUgaaugaCAUgCUGGGGCG-CAUCGc -3'
miRNA:   3'- cCGGUGCA------GUA-GGCCCCGCaGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 3330 0.71 0.551405
Target:  5'- cGGCgGCGggCuucCCGcGGGCGUCGUCGc -3'
miRNA:   3'- -CCGgUGCa-Gua-GGC-CCCGCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 85025 0.72 0.541686
Target:  5'- uGGCgACGUCcgCCccgGGGGUGcCGUCGa -3'
miRNA:   3'- -CCGgUGCAGuaGG---CCCCGCaGUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.