miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5304 5' -54.8 NC_001798.1 + 17837 1.13 0.002151
Target:  5'- cCCAGCCCGGUCACCAGUUUUGCCAGGg -3'
miRNA:   3'- -GGUCGGGCCAGUGGUCAAAACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 66828 0.8 0.308135
Target:  5'- cCCGGCCCGGU-GCCGGcgcccagGCCGGGg -3'
miRNA:   3'- -GGUCGGGCCAgUGGUCaaaa---CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 30434 0.76 0.464551
Target:  5'- cCCGGCCCGGcCcCCGGccgagcGCCAGGg -3'
miRNA:   3'- -GGUCGGGCCaGuGGUCaaaa--CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 87952 0.76 0.492861
Target:  5'- gCCAGCUCGGaCACCAGcagcUUGCgGGGc -3'
miRNA:   3'- -GGUCGGGCCaGUGGUCaa--AACGgUCC- -5'
5304 5' -54.8 NC_001798.1 + 24883 0.75 0.541688
Target:  5'- -gAGCCUGGUCGCCGGg---GCCcuGGGc -3'
miRNA:   3'- ggUCGGGCCAGUGGUCaaaaCGG--UCC- -5'
5304 5' -54.8 NC_001798.1 + 1516 0.74 0.602198
Target:  5'- gCGGCCCGGcCGuCCAGc---GCCGGGa -3'
miRNA:   3'- gGUCGGGCCaGU-GGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 54393 0.74 0.602198
Target:  5'- gCGGCgCGGUCGgCGGgagcUGCCGGGa -3'
miRNA:   3'- gGUCGgGCCAGUgGUCaaa-ACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 4071 0.73 0.632842
Target:  5'- gCGGCCCgcGGUCGCCgcgggGGUccggGCCGGGg -3'
miRNA:   3'- gGUCGGG--CCAGUGG-----UCAaaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 111758 0.73 0.643066
Target:  5'- cCCGGuCCCGGcCAUCGGUUggggGCgCGGGu -3'
miRNA:   3'- -GGUC-GGGCCaGUGGUCAAaa--CG-GUCC- -5'
5304 5' -54.8 NC_001798.1 + 62437 0.72 0.713919
Target:  5'- uCCAGCCCccggacGUCGCCGGUgg-GCCGc- -3'
miRNA:   3'- -GGUCGGGc-----CAGUGGUCAaaaCGGUcc -5'
5304 5' -54.8 NC_001798.1 + 46055 0.71 0.73367
Target:  5'- cCCGGCUUguagGGUCACCGGgacuccgGUCAGGu -3'
miRNA:   3'- -GGUCGGG----CCAGUGGUCaaaa---CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 112023 0.71 0.743419
Target:  5'- gCAcCCCGGUCACCAGcacccCCGGGc -3'
miRNA:   3'- gGUcGGGCCAGUGGUCaaaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 65641 0.71 0.743419
Target:  5'- aCGGCCCGaacGUCGCUg----UGCCAGGg -3'
miRNA:   3'- gGUCGGGC---CAGUGGucaaaACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 3764 0.71 0.762615
Target:  5'- cCCAGCUCGGgcgccCACaCGGgc--GCCGGGg -3'
miRNA:   3'- -GGUCGGGCCa----GUG-GUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 127075 0.7 0.78135
Target:  5'- uCCAcgauauCCCGGg-GCCAGUUUUGCCuccAGGa -3'
miRNA:   3'- -GGUc-----GGGCCagUGGUCAAAACGG---UCC- -5'
5304 5' -54.8 NC_001798.1 + 6369 0.7 0.79955
Target:  5'- aCgGGCCgGGggGCCGGggg-GCCGGGg -3'
miRNA:   3'- -GgUCGGgCCagUGGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 25516 0.7 0.808427
Target:  5'- gCGGCCUGGaugCGCCAGg--UGCCcgacccggAGGa -3'
miRNA:   3'- gGUCGGGCCa--GUGGUCaaaACGG--------UCC- -5'
5304 5' -54.8 NC_001798.1 + 28684 0.69 0.825696
Target:  5'- gCGGCCgaggCGGUCAUCGGaccgUGCCuGGa -3'
miRNA:   3'- gGUCGG----GCCAGUGGUCaaa-ACGGuCC- -5'
5304 5' -54.8 NC_001798.1 + 40111 0.69 0.825696
Target:  5'- gUAGCCauguuguaGGUCGCCGGg---GCUGGGa -3'
miRNA:   3'- gGUCGGg-------CCAGUGGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 95590 0.69 0.840639
Target:  5'- -aGGCCCuGGUCAgCCAGcucggcgccGCCGGGg -3'
miRNA:   3'- ggUCGGG-CCAGU-GGUCaaaa-----CGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.