miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5304 5' -54.8 NC_001798.1 + 1516 0.74 0.602198
Target:  5'- gCGGCCCGGcCGuCCAGc---GCCGGGa -3'
miRNA:   3'- gGUCGGGCCaGU-GGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 1901 0.68 0.893913
Target:  5'- gCAGCCCcaggaacuccacGG-CGCCGGcgaagGCCAGGu -3'
miRNA:   3'- gGUCGGG------------CCaGUGGUCaaaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 2025 0.66 0.948304
Target:  5'- gCgGGCCCGcagaGCCGGUUgc-CCAGGg -3'
miRNA:   3'- -GgUCGGGCcag-UGGUCAAaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 2621 0.66 0.948304
Target:  5'- gCC-GCCCGGcggCGCCcug---GCCGGGg -3'
miRNA:   3'- -GGuCGGGCCa--GUGGucaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 3764 0.71 0.762615
Target:  5'- cCCAGCUCGGgcgccCACaCGGgc--GCCGGGg -3'
miRNA:   3'- -GGUCGGGCCa----GUG-GUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 4071 0.73 0.632842
Target:  5'- gCGGCCCgcGGUCGCCgcgggGGUccggGCCGGGg -3'
miRNA:   3'- gGUCGGG--CCAGUGG-----UCAaaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 5958 0.69 0.858066
Target:  5'- gCCGGCgucCCGGUCGCCGccgca-CCAGGg -3'
miRNA:   3'- -GGUCG---GGCCAGUGGUcaaaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 6369 0.7 0.79955
Target:  5'- aCgGGCCgGGggGCCGGggg-GCCGGGg -3'
miRNA:   3'- -GgUCGGgCCagUGGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 12296 0.67 0.912124
Target:  5'- -aGGCCCaGGaUCGCCAGgcccugcagcgagcgGCCGGGc -3'
miRNA:   3'- ggUCGGG-CC-AGUGGUCaaaa-----------CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 14816 0.67 0.912716
Target:  5'- cCCcGCCCGGccgCGCCaaAGUUgugcUGCCaAGGc -3'
miRNA:   3'- -GGuCGGGCCa--GUGG--UCAAa---ACGG-UCC- -5'
5304 5' -54.8 NC_001798.1 + 15058 0.66 0.943931
Target:  5'- -gGGCCCGGggcgCGCgGGggguggUUUGUUGGGg -3'
miRNA:   3'- ggUCGGGCCa---GUGgUCa-----AAACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 17837 1.13 0.002151
Target:  5'- cCCAGCCCGGUCACCAGUUUUGCCAGGg -3'
miRNA:   3'- -GGUCGGGCCAGUGGUCAAAACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 24883 0.75 0.541688
Target:  5'- -gAGCCUGGUCGCCGGg---GCCcuGGGc -3'
miRNA:   3'- ggUCGGGCCAGUGGUCaaaaCGG--UCC- -5'
5304 5' -54.8 NC_001798.1 + 25516 0.7 0.808427
Target:  5'- gCGGCCUGGaugCGCCAGg--UGCCcgacccggAGGa -3'
miRNA:   3'- gGUCGGGCCa--GUGGUCaaaACGG--------UCC- -5'
5304 5' -54.8 NC_001798.1 + 25997 0.66 0.939323
Target:  5'- gCUGGCcuCCGGcCGCguGUUcggGCCGGGg -3'
miRNA:   3'- -GGUCG--GGCCaGUGguCAAaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 26229 0.67 0.906682
Target:  5'- gCCAuggcGCCCGGcgCGCCGGacUUcUGCgAGGa -3'
miRNA:   3'- -GGU----CGGGCCa-GUGGUC--AAaACGgUCC- -5'
5304 5' -54.8 NC_001798.1 + 27765 0.68 0.887184
Target:  5'- aCGGCCCGGgcugcgcaCGCCA-----GCCGGGa -3'
miRNA:   3'- gGUCGGGCCa-------GUGGUcaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 28684 0.69 0.825696
Target:  5'- gCGGCCgaggCGGUCAUCGGaccgUGCCuGGa -3'
miRNA:   3'- gGUCGG----GCCAGUGGUCaaa-ACGGuCC- -5'
5304 5' -54.8 NC_001798.1 + 29778 0.68 0.893913
Target:  5'- cCCGGCCCGG-CACgAGcuc--CCGGGc -3'
miRNA:   3'- -GGUCGGGCCaGUGgUCaaaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 30434 0.76 0.464551
Target:  5'- cCCGGCCCGGcCcCCGGccgagcGCCAGGg -3'
miRNA:   3'- -GGUCGGGCCaGuGGUCaaaa--CGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.