miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 3' -55.6 NC_001798.1 + 16516 1.08 0.00407
Target:  5'- uACGUCACACGGGCCGCAUACGUUGCGu -3'
miRNA:   3'- -UGCAGUGUGCCCGGCGUAUGCAACGC- -5'
5306 3' -55.6 NC_001798.1 + 26486 0.76 0.442575
Target:  5'- gGCGUCGgcCGCGGGCCGCGcggggACGgUGCu -3'
miRNA:   3'- -UGCAGU--GUGCCCGGCGUa----UGCaACGc -5'
5306 3' -55.6 NC_001798.1 + 24131 0.75 0.460851
Target:  5'- aGCGUgGCGCGGGCCGUgccccaccugggGUACGccaugGCGg -3'
miRNA:   3'- -UGCAgUGUGCCCGGCG------------UAUGCaa---CGC- -5'
5306 3' -55.6 NC_001798.1 + 43142 0.73 0.557463
Target:  5'- cGCGUCACGCGGGCC-CAguCGUcccGCGc -3'
miRNA:   3'- -UGCAGUGUGCCCGGcGUauGCAa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 1390 0.73 0.587685
Target:  5'- aGCGcCACguagACGGGCCGCA-GCGgcGCGc -3'
miRNA:   3'- -UGCaGUG----UGCCCGGCGUaUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 62448 0.72 0.648796
Target:  5'- gACGUCGCcggUGGGCCGCGcgACGgcGCc -3'
miRNA:   3'- -UGCAGUGu--GCCCGGCGUa-UGCaaCGc -5'
5306 3' -55.6 NC_001798.1 + 15220 0.71 0.669145
Target:  5'- aGCGUC-CGCGGGuCCGUGUGgGU-GCGu -3'
miRNA:   3'- -UGCAGuGUGCCC-GGCGUAUgCAaCGC- -5'
5306 3' -55.6 NC_001798.1 + 87862 0.71 0.679279
Target:  5'- aACGUCACGCaGGCCGCccccaGCaggUGCGa -3'
miRNA:   3'- -UGCAGUGUGcCCGGCGua---UGca-ACGC- -5'
5306 3' -55.6 NC_001798.1 + 121683 0.71 0.680291
Target:  5'- uACGUCGCGCggcuggGGGCCGCGgcucccgccgccgcgACGgagGCGg -3'
miRNA:   3'- -UGCAGUGUG------CCCGGCGUa--------------UGCaa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 2956 0.71 0.699423
Target:  5'- cGCG-CAgGCGGGgCGCGUcgGCGUgcgGCGg -3'
miRNA:   3'- -UGCaGUgUGCCCgGCGUA--UGCAa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 140185 0.71 0.699423
Target:  5'- ---gUACGCGGGCCGCcUGCGgccggUGCu -3'
miRNA:   3'- ugcaGUGUGCCCGGCGuAUGCa----ACGc -5'
5306 3' -55.6 NC_001798.1 + 97631 0.71 0.709415
Target:  5'- cGCG--ACGCGGGCCGCc-GCGgacgUGCGg -3'
miRNA:   3'- -UGCagUGUGCCCGGCGuaUGCa---ACGC- -5'
5306 3' -55.6 NC_001798.1 + 74038 0.71 0.719342
Target:  5'- gGCGgCGCGC-GGCgGCcUGCGUUGCGu -3'
miRNA:   3'- -UGCaGUGUGcCCGgCGuAUGCAACGC- -5'
5306 3' -55.6 NC_001798.1 + 23691 0.7 0.729194
Target:  5'- cGCGaCGcCACGGGCCGCuucACGgccggGCGg -3'
miRNA:   3'- -UGCaGU-GUGCCCGGCGua-UGCaa---CGC- -5'
5306 3' -55.6 NC_001798.1 + 78379 0.7 0.738963
Target:  5'- aGCGaggaCGCGCuGGUCGCGUGCGcgGCGg -3'
miRNA:   3'- -UGCa---GUGUGcCCGGCGUAUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 77711 0.7 0.738963
Target:  5'- aGCGa-GCGCuGGGCCGCcgGCGUcgagGCGg -3'
miRNA:   3'- -UGCagUGUG-CCCGGCGuaUGCAa---CGC- -5'
5306 3' -55.6 NC_001798.1 + 37169 0.7 0.738963
Target:  5'- cCGcCugGCGGGCCGCu--CGgcGCGc -3'
miRNA:   3'- uGCaGugUGCCCGGCGuauGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 22781 0.69 0.777023
Target:  5'- gACGUCuC-CGGGCCGCGgcggagACGaccgGCGg -3'
miRNA:   3'- -UGCAGuGuGCCCGGCGUa-----UGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 42214 0.69 0.777023
Target:  5'- aGCG-C-CGCGGGUCgGCGUGCGcgGCGa -3'
miRNA:   3'- -UGCaGuGUGCCCGG-CGUAUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 9185 0.69 0.786238
Target:  5'- --cUCugGCGGGuccCCGCGUGCGUccGCGa -3'
miRNA:   3'- ugcAGugUGCCC---GGCGUAUGCAa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.