miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 3' -55.6 NC_001798.1 + 1125 0.68 0.8543
Target:  5'- cAUGUC-CACGGGCuCGCGccucgGCGgcGUGg -3'
miRNA:   3'- -UGCAGuGUGCCCG-GCGUa----UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 1390 0.73 0.587685
Target:  5'- aGCGcCACguagACGGGCCGCA-GCGgcGCGc -3'
miRNA:   3'- -UGCaGUG----UGCCCGGCGUaUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 1650 0.66 0.926715
Target:  5'- cGCGUCGgggUACaGGCgCGCGUGCGcgGCc -3'
miRNA:   3'- -UGCAGU---GUGcCCG-GCGUAUGCaaCGc -5'
5306 3' -55.6 NC_001798.1 + 2231 0.67 0.883774
Target:  5'- gGCG-CGCAgCGGGCCGaagGCGgcggGCGc -3'
miRNA:   3'- -UGCaGUGU-GCCCGGCguaUGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 2504 0.67 0.86946
Target:  5'- cGCGggGCGCGgcGGCCGCGgcggcgGCGUcgGCGg -3'
miRNA:   3'- -UGCagUGUGC--CCGGCGUa-----UGCAa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 2956 0.71 0.699423
Target:  5'- cGCG-CAgGCGGGgCGCGUcgGCGUgcgGCGg -3'
miRNA:   3'- -UGCaGUgUGCCCgGCGUA--UGCAa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 4822 0.67 0.897201
Target:  5'- cCGUgcCACccgaaccCGGGCCGCGcgGCGggGCGa -3'
miRNA:   3'- uGCA--GUGu------GCCCGGCGUa-UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 9185 0.69 0.786238
Target:  5'- --cUCugGCGGGuccCCGCGUGCGUccGCGa -3'
miRNA:   3'- ugcAGugUGCCC---GGCGUAUGCAa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 9649 0.69 0.821636
Target:  5'- cCGaggCGCAgCGGGCCGCGcGCGgaggGCGc -3'
miRNA:   3'- uGCa--GUGU-GCCCGGCGUaUGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 15220 0.71 0.669145
Target:  5'- aGCGUC-CGCGGGuCCGUGUGgGU-GCGu -3'
miRNA:   3'- -UGCAGuGUGCCC-GGCGUAUgCAaCGC- -5'
5306 3' -55.6 NC_001798.1 + 16064 0.66 0.915616
Target:  5'- -gGUCGCugGgGGCgGCGgGCGUcUGUGg -3'
miRNA:   3'- ugCAGUGugC-CCGgCGUaUGCA-ACGC- -5'
5306 3' -55.6 NC_001798.1 + 16516 1.08 0.00407
Target:  5'- uACGUCACACGGGCCGCAUACGUUGCGu -3'
miRNA:   3'- -UGCAGUGUGCCCGGCGUAUGCAACGC- -5'
5306 3' -55.6 NC_001798.1 + 22285 0.69 0.813023
Target:  5'- gAUGcCGCGCGGGCggaGCGgcgGCGgcGCGa -3'
miRNA:   3'- -UGCaGUGUGCCCGg--CGUa--UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 22781 0.69 0.777023
Target:  5'- gACGUCuC-CGGGCCGCGgcggagACGaccgGCGg -3'
miRNA:   3'- -UGCAGuGuGCCCGGCGUa-----UGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 23211 0.66 0.915616
Target:  5'- cGCG--ACGCGGGCCGC-UGgGUccGCGg -3'
miRNA:   3'- -UGCagUGUGCCCGGCGuAUgCAa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 23691 0.7 0.729194
Target:  5'- cGCGaCGcCACGGGCCGCuucACGgccggGCGg -3'
miRNA:   3'- -UGCaGU-GUGCCCGGCGua-UGCaa---CGC- -5'
5306 3' -55.6 NC_001798.1 + 24131 0.75 0.460851
Target:  5'- aGCGUgGCGCGGGCCGUgccccaccugggGUACGccaugGCGg -3'
miRNA:   3'- -UGCAgUGUGCCCGGCG------------UAUGCaa---CGC- -5'
5306 3' -55.6 NC_001798.1 + 24576 0.67 0.86946
Target:  5'- gGCG-CGCggagGCGGGCCGCGUGgcCGUggagUGCc -3'
miRNA:   3'- -UGCaGUG----UGCCCGGCGUAU--GCA----ACGc -5'
5306 3' -55.6 NC_001798.1 + 25738 0.68 0.83834
Target:  5'- gACGUCucgGCGCuGGGCgCGCAggGCGUgcUGCu -3'
miRNA:   3'- -UGCAG---UGUG-CCCG-GCGUa-UGCA--ACGc -5'
5306 3' -55.6 NC_001798.1 + 26325 0.66 0.931909
Target:  5'- uACGUggCGCugGGGCgcgaCGCcGUGCGcgGCGg -3'
miRNA:   3'- -UGCA--GUGugCCCG----GCG-UAUGCaaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.