miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 5' -58.7 NC_001798.1 + 16550 1.1 0.001381
Target:  5'- cGCCAAAUCCGCGUACCGGCGGCGCCAg -3'
miRNA:   3'- -CGGUUUAGGCGCAUGGCCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 150037 0.79 0.190733
Target:  5'- uCCGAGUCCGgGgcCCGGCgcGGCGCCGc -3'
miRNA:   3'- cGGUUUAGGCgCauGGCCG--CCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 143225 0.77 0.236863
Target:  5'- aUCGuAUCCGUGaGCUGGCGGCGCCc -3'
miRNA:   3'- cGGUuUAGGCGCaUGGCCGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 106117 0.77 0.236863
Target:  5'- cGCCGGGUCUGCGguuCCGGCGGCa--- -3'
miRNA:   3'- -CGGUUUAGGCGCau-GGCCGCCGcggu -5'
5306 5' -58.7 NC_001798.1 + 94958 0.77 0.253607
Target:  5'- cGCCGGGUCCcgccguccccccaGCGUGCaGGCGGCgGCCGc -3'
miRNA:   3'- -CGGUUUAGG-------------CGCAUGgCCGCCG-CGGU- -5'
5306 5' -58.7 NC_001798.1 + 4038 0.77 0.260208
Target:  5'- gGCCAccgCCGCGcgggcCCGGCGGCGCUc -3'
miRNA:   3'- -CGGUuuaGGCGCau---GGCCGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 139059 0.77 0.265712
Target:  5'- gGCUGGAggCCGCGgGCCaccacguGGCGGCGCCAg -3'
miRNA:   3'- -CGGUUUa-GGCGCaUGG-------CCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 93277 0.76 0.272567
Target:  5'- cGCCGGcgCCgucgggGCGUACCuGGCGcGCGCCGc -3'
miRNA:   3'- -CGGUUuaGG------CGCAUGG-CCGC-CGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 72797 0.76 0.285394
Target:  5'- aGUCAGuUCCugGCGcGCUGGCGGCGCCu -3'
miRNA:   3'- -CGGUUuAGG--CGCaUGGCCGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 28650 0.76 0.285394
Target:  5'- gGCCGA--CCGCG-ACCGGUuccGGCGCCGc -3'
miRNA:   3'- -CGGUUuaGGCGCaUGGCCG---CCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 102344 0.76 0.298692
Target:  5'- cCCGGAUcCCGUGgucuCCGGCGGcCGCCGg -3'
miRNA:   3'- cGGUUUA-GGCGCau--GGCCGCC-GCGGU- -5'
5306 5' -58.7 NC_001798.1 + 135789 0.75 0.305519
Target:  5'- cGCCGGAggaggCCGUGUGCgCGGCccggGGCGUCAu -3'
miRNA:   3'- -CGGUUUa----GGCGCAUG-GCCG----CCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 59986 0.75 0.334018
Target:  5'- cGCCGAcaCCGCGUugggGCCGGUGGCGgUg -3'
miRNA:   3'- -CGGUUuaGGCGCA----UGGCCGCCGCgGu -5'
5306 5' -58.7 NC_001798.1 + 86729 0.75 0.34144
Target:  5'- gGCCAcauuuGUCCGCGagGCCGGCG-CGCUg -3'
miRNA:   3'- -CGGUu----UAGGCGCa-UGGCCGCcGCGGu -5'
5306 5' -58.7 NC_001798.1 + 130512 0.75 0.34144
Target:  5'- gGCCAGG-CCGaCGaUGCCGGUGGCGgCGa -3'
miRNA:   3'- -CGGUUUaGGC-GC-AUGGCCGCCGCgGU- -5'
5306 5' -58.7 NC_001798.1 + 122223 0.74 0.35203
Target:  5'- gGCUGGA-CCGCGggugggaagcucugGCCGGCGGCGaCCGg -3'
miRNA:   3'- -CGGUUUaGGCGCa-------------UGGCCGCCGC-GGU- -5'
5306 5' -58.7 NC_001798.1 + 2431 0.74 0.364415
Target:  5'- gGCUggGcCC-CGgcgGCUGGCGGCGCCAg -3'
miRNA:   3'- -CGGuuUaGGcGCa--UGGCCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 25944 0.74 0.364415
Target:  5'- cGCCGGcagugcgCCGUGcgcugGCCGGCGGCGCgGg -3'
miRNA:   3'- -CGGUUua-----GGCGCa----UGGCCGCCGCGgU- -5'
5306 5' -58.7 NC_001798.1 + 25797 0.74 0.387621
Target:  5'- cGCCGGcgCCGUGgaguuccuggggcUGCUGGcCGGCGCCu -3'
miRNA:   3'- -CGGUUuaGGCGC-------------AUGGCC-GCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 54991 0.74 0.388438
Target:  5'- uGCCcucgCCgGCGUcuuGCCGGCGGgGCCGc -3'
miRNA:   3'- -CGGuuuaGG-CGCA---UGGCCGCCgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.