miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 5' -58.7 NC_001798.1 + 1259 0.66 0.800914
Target:  5'- gGCCcgcGUCCGCGUcgucgcgcagcaccAgCGGgGGCGCg- -3'
miRNA:   3'- -CGGuu-UAGGCGCA--------------UgGCCgCCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 1359 0.68 0.720271
Target:  5'- cGCCGGGccgCCGCGca-CGGCGucGCGCCc -3'
miRNA:   3'- -CGGUUUa--GGCGCaugGCCGC--CGCGGu -5'
5306 5' -58.7 NC_001798.1 + 1736 0.67 0.767649
Target:  5'- gGCgCAGGUCCcGCGccGCCGGCcagcgcacGGCGCa- -3'
miRNA:   3'- -CG-GUUUAGG-CGCa-UGGCCG--------CCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 2126 0.66 0.785853
Target:  5'- gGCCAGGUCCuCGc-CCGGCaGCGgCGa -3'
miRNA:   3'- -CGGUUUAGGcGCauGGCCGcCGCgGU- -5'
5306 5' -58.7 NC_001798.1 + 2431 0.74 0.364415
Target:  5'- gGCUggGcCC-CGgcgGCUGGCGGCGCCAg -3'
miRNA:   3'- -CGGuuUaGGcGCa--UGGCCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 2495 0.71 0.521666
Target:  5'- gGUCAGcgCCGCGggGCgcggcggccgcggCGGCGGCGUCGg -3'
miRNA:   3'- -CGGUUuaGGCGCa-UG-------------GCCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 2611 0.71 0.541956
Target:  5'- gGCgCGGGgcgCCGC---CCGGCGGCGCCc -3'
miRNA:   3'- -CG-GUUUa--GGCGcauGGCCGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 2758 0.73 0.40502
Target:  5'- -gCAGGUCCGCGg--CGGCGGCGgCGg -3'
miRNA:   3'- cgGUUUAGGCGCaugGCCGCCGCgGU- -5'
5306 5' -58.7 NC_001798.1 + 3136 0.72 0.49415
Target:  5'- cGCC---UCCGCGcGCCGGCcGcCGCCAc -3'
miRNA:   3'- -CGGuuuAGGCGCaUGGCCGcC-GCGGU- -5'
5306 5' -58.7 NC_001798.1 + 3267 0.67 0.758369
Target:  5'- aGCCGGcgggcaCCGCGcgcucgucgGCCGGCGaCGCCGc -3'
miRNA:   3'- -CGGUUua----GGCGCa--------UGGCCGCcGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 3703 0.67 0.767649
Target:  5'- cGCC---UCCGCGU-CCGGCGuGUacagcaGCCGc -3'
miRNA:   3'- -CGGuuuAGGCGCAuGGCCGC-CG------CGGU- -5'
5306 5' -58.7 NC_001798.1 + 3963 0.7 0.598168
Target:  5'- cGCCGGAggCCGCGUcggcguccagcucgACCGcCGGgGCCGc -3'
miRNA:   3'- -CGGUUUa-GGCGCA--------------UGGCcGCCgCGGU- -5'
5306 5' -58.7 NC_001798.1 + 4038 0.77 0.260208
Target:  5'- gGCCAccgCCGCGcgggcCCGGCGGCGCUc -3'
miRNA:   3'- -CGGUuuaGGCGCau---GGCCGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 4203 0.68 0.675062
Target:  5'- gGCguGGUCUGCGgcgcuggcgggggcGCgGGCGGCGUCGu -3'
miRNA:   3'- -CGguUUAGGCGCa-------------UGgCCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 4353 0.68 0.671085
Target:  5'- gGCCGAGcgCCgGCGgggggcgcGCCGGCGGCGgUg -3'
miRNA:   3'- -CGGUUUa-GG-CGCa-------UGGCCGCCGCgGu -5'
5306 5' -58.7 NC_001798.1 + 4749 0.67 0.766726
Target:  5'- cGCCGGggCCGCcucGUcggcaucggcaucGgCGGCGGCGUCGu -3'
miRNA:   3'- -CGGUUuaGGCG---CA-------------UgGCCGCCGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 5372 0.71 0.551711
Target:  5'- cGCCcgcgcGUCCGCGU-CCguGGCGGCgGCCc -3'
miRNA:   3'- -CGGuu---UAGGCGCAuGG--CCGCCG-CGGu -5'
5306 5' -58.7 NC_001798.1 + 5602 0.69 0.630138
Target:  5'- cGCCccguuGGUCCGCGggcgGCUccgccccaaagggGGCGGgGCCGc -3'
miRNA:   3'- -CGGu----UUAGGCGCa---UGG-------------CCGCCgCGGU- -5'
5306 5' -58.7 NC_001798.1 + 6372 0.68 0.700754
Target:  5'- gGCCGGGgggCCGgGggGCCGG-GGgGCCGg -3'
miRNA:   3'- -CGGUUUa--GGCgCa-UGGCCgCCgCGGU- -5'
5306 5' -58.7 NC_001798.1 + 8676 0.68 0.671085
Target:  5'- aGCCcGAcgcaCCGCGUgcgccGCCGuCGGCGCCu -3'
miRNA:   3'- -CGGuUUa---GGCGCA-----UGGCcGCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.