miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5310 5' -56.8 NC_001798.1 + 110965 0.67 0.866312
Target:  5'- cCCCCACGGUcAGGaccaGGGACGuCAcgcccgucAGGCg -3'
miRNA:   3'- -GGGGUGCUAcUCC----CCCUGCcGU--------UUCG- -5'
5310 5' -56.8 NC_001798.1 + 86434 0.67 0.866312
Target:  5'- aCCCCGaggcgcagccCGggGAcGGGGGcCGGUucguGAGCc -3'
miRNA:   3'- -GGGGU----------GCuaCU-CCCCCuGCCGu---UUCG- -5'
5310 5' -56.8 NC_001798.1 + 34955 0.67 0.866312
Target:  5'- aCgCGCGGcgccgGAGGGGG-CGGCcgccGAGGUg -3'
miRNA:   3'- gGgGUGCUa----CUCCCCCuGCCG----UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 27123 0.67 0.866312
Target:  5'- cCCCCGCagGAgcGGGaGGGAaGGCAcgGGGCg -3'
miRNA:   3'- -GGGGUG--CUacUCC-CCCUgCCGU--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 1624 0.67 0.866312
Target:  5'- gCCCCGCGGcaGAGGcGcaGCGGCGgcGCg -3'
miRNA:   3'- -GGGGUGCUa-CUCC-CccUGCCGUuuCG- -5'
5310 5' -56.8 NC_001798.1 + 150830 0.67 0.865576
Target:  5'- gCUCCGCGggGcgccAGGGGGcgccggucgggucGCGGC-GGGCu -3'
miRNA:   3'- -GGGGUGCuaC----UCCCCC-------------UGCCGuUUCG- -5'
5310 5' -56.8 NC_001798.1 + 9677 0.67 0.858859
Target:  5'- gCgCGgGAUGGGGGgcucucacgugcGGGCGGguGGGCu -3'
miRNA:   3'- gGgGUgCUACUCCC------------CCUGCCguUUCG- -5'
5310 5' -56.8 NC_001798.1 + 69175 0.67 0.858859
Target:  5'- gCCCGauggcgggccaGGUGGGGGaGGuCGGUggGGUg -3'
miRNA:   3'- gGGGUg----------CUACUCCC-CCuGCCGuuUCG- -5'
5310 5' -56.8 NC_001798.1 + 96028 0.67 0.858859
Target:  5'- aCCgGCGggGcGGGcGGGCGgGCGAcgGGCa -3'
miRNA:   3'- gGGgUGCuaCuCCC-CCUGC-CGUU--UCG- -5'
5310 5' -56.8 NC_001798.1 + 103620 0.67 0.854292
Target:  5'- aCCCgcacaaacaaacaaaACGGgaagGGGGGGGGgGGUGgAAGCg -3'
miRNA:   3'- gGGG---------------UGCUa---CUCCCCCUgCCGU-UUCG- -5'
5310 5' -56.8 NC_001798.1 + 27587 0.67 0.851208
Target:  5'- gCUCCgggggagggACGggGAaGGGGGCGcGCGGGGCu -3'
miRNA:   3'- -GGGG---------UGCuaCUcCCCCUGC-CGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 52326 0.67 0.851208
Target:  5'- gCCCCugGGcagccccGGGGucguGGCGGCcGAGCa -3'
miRNA:   3'- -GGGGugCUacu----CCCC----CUGCCGuUUCG- -5'
5310 5' -56.8 NC_001798.1 + 146071 0.67 0.851208
Target:  5'- --aCACGGggggGAGGGGuccGgGGCGAGGCg -3'
miRNA:   3'- gggGUGCUa---CUCCCCc--UgCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 153802 0.67 0.851208
Target:  5'- -gCgGCGgcGGGGGGcaGGCGGCGgcAGGCg -3'
miRNA:   3'- ggGgUGCuaCUCCCC--CUGCCGU--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 20278 0.67 0.851208
Target:  5'- gCCCCACG-UGcgcggccccAGGcGGGucCGGCAGuAGCc -3'
miRNA:   3'- -GGGGUGCuAC---------UCC-CCCu-GCCGUU-UCG- -5'
5310 5' -56.8 NC_001798.1 + 118092 0.67 0.851208
Target:  5'- gCCCGCGAUGGGGaGGcccACGcGCGAGa- -3'
miRNA:   3'- gGGGUGCUACUCC-CCc--UGC-CGUUUcg -5'
5310 5' -56.8 NC_001798.1 + 148257 0.67 0.851208
Target:  5'- uCCCCGCagccagGGUaAGGaGGGGCgGGCGuGGCg -3'
miRNA:   3'- -GGGGUG------CUAcUCC-CCCUG-CCGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 57729 0.67 0.851208
Target:  5'- cCCCCGCGAagGAccGGuGGGcgcgccCGGCGcAGCg -3'
miRNA:   3'- -GGGGUGCUa-CU--CC-CCCu-----GCCGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 22397 0.67 0.843366
Target:  5'- aCCCCgGCGAgccGGGGcGCGGC--GGCg -3'
miRNA:   3'- -GGGG-UGCUacuCCCCcUGCCGuuUCG- -5'
5310 5' -56.8 NC_001798.1 + 105815 0.67 0.843366
Target:  5'- gCCagaaGCGGggGAGGGGGGgGGgAAAGa -3'
miRNA:   3'- gGGg---UGCUa-CUCCCCCUgCCgUUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.