miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5310 5' -56.8 NC_001798.1 + 14275 1.12 0.001695
Target:  5'- cCCCCACGAUGAGGGGGACGGCAAAGCc -3'
miRNA:   3'- -GGGGUGCUACUCCCCCUGCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 55877 0.84 0.128738
Target:  5'- uCCCCACGAggacGAGGGGGuacgagaaccaacGCGGCGacGAGCg -3'
miRNA:   3'- -GGGGUGCUa---CUCCCCC-------------UGCCGU--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 2554 0.82 0.178926
Target:  5'- cCCCCGCGG-GAGGGGcGGCcGCGGGGCg -3'
miRNA:   3'- -GGGGUGCUaCUCCCC-CUGcCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 146683 0.81 0.202289
Target:  5'- cUCCCACGuugGGGGGGGGCGcGCAgcuGAGUg -3'
miRNA:   3'- -GGGGUGCua-CUCCCCCUGC-CGU---UUCG- -5'
5310 5' -56.8 NC_001798.1 + 150188 0.8 0.233777
Target:  5'- cCUCCGCGgcGuGGGGGGCGGCAccggGGGUg -3'
miRNA:   3'- -GGGGUGCuaCuCCCCCUGCCGU----UUCG- -5'
5310 5' -56.8 NC_001798.1 + 31859 0.79 0.245155
Target:  5'- cCCCCACGccgcgGAGGGGGcgGCGGCccgcccccggaaGAGGCg -3'
miRNA:   3'- -GGGGUGCua---CUCCCCC--UGCCG------------UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 81266 0.79 0.245155
Target:  5'- aCCCGCGGgaccuugcgGGGGGGGAUGGCGGAu- -3'
miRNA:   3'- gGGGUGCUa--------CUCCCCCUGCCGUUUcg -5'
5310 5' -56.8 NC_001798.1 + 27539 0.79 0.245155
Target:  5'- gCCCCGCGGcgcgcggGGGGaGGGGCGGCGcccgcggggGAGCg -3'
miRNA:   3'- -GGGGUGCUa------CUCC-CCCUGCCGU---------UUCG- -5'
5310 5' -56.8 NC_001798.1 + 44831 0.79 0.251014
Target:  5'- cCCCUGCGAacccgGAGGGGGugGGguGGGg -3'
miRNA:   3'- -GGGGUGCUa----CUCCCCCugCCguUUCg -5'
5310 5' -56.8 NC_001798.1 + 133859 0.78 0.302095
Target:  5'- gCCCAUGAUGcAGGGGG-CGGUGAacuuuAGCa -3'
miRNA:   3'- gGGGUGCUAC-UCCCCCuGCCGUU-----UCG- -5'
5310 5' -56.8 NC_001798.1 + 64500 0.78 0.309015
Target:  5'- -aCCGCcg-GAGGGGGugGGCGGGGUc -3'
miRNA:   3'- ggGGUGcuaCUCCCCCugCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 36272 0.78 0.311115
Target:  5'- aCCCCGgGGUGggcggcgGGGGGGggugccgugggugugGCGGCGGGGCg -3'
miRNA:   3'- -GGGGUgCUAC-------UCCCCC---------------UGCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 41459 0.77 0.323217
Target:  5'- gCCCCGCc--GGGGGGGGCGGUc-GGCg -3'
miRNA:   3'- -GGGGUGcuaCUCCCCCUGCCGuuUCG- -5'
5310 5' -56.8 NC_001798.1 + 57557 0.77 0.330498
Target:  5'- uUCCGCGGggacgcgGAGGGGG-CGGCAuuGCu -3'
miRNA:   3'- gGGGUGCUa------CUCCCCCuGCCGUuuCG- -5'
5310 5' -56.8 NC_001798.1 + 15175 0.77 0.345421
Target:  5'- uCCgCCGCGAUGuucGGGGGGugGGgGGgcuGGCg -3'
miRNA:   3'- -GG-GGUGCUAC---UCCCCCugCCgUU---UCG- -5'
5310 5' -56.8 NC_001798.1 + 74203 0.77 0.352292
Target:  5'- cCCCCugGGcaUGGGGcucuaccGGGACGGCGAcacGGCc -3'
miRNA:   3'- -GGGGugCU--ACUCC-------CCCUGCCGUU---UCG- -5'
5310 5' -56.8 NC_001798.1 + 85801 0.77 0.353062
Target:  5'- aCCCUggccuccggggGCGAUGAcGGGGGGgGGCGGGGg -3'
miRNA:   3'- -GGGG-----------UGCUACU-CCCCCUgCCGUUUCg -5'
5310 5' -56.8 NC_001798.1 + 105997 0.76 0.360821
Target:  5'- aCCCCugGG-GAGGGGGGgucgcucucUGGUggGGCc -3'
miRNA:   3'- -GGGGugCUaCUCCCCCU---------GCCGuuUCG- -5'
5310 5' -56.8 NC_001798.1 + 11171 0.76 0.384804
Target:  5'- -aCCACGAUGGGGGcGGugGGgcGGGCc -3'
miRNA:   3'- ggGGUGCUACUCCC-CCugCCguUUCG- -5'
5310 5' -56.8 NC_001798.1 + 28770 0.76 0.384804
Target:  5'- aCCCGCGGagGAGGaGGaGGCGGCGGcGGCg -3'
miRNA:   3'- gGGGUGCUa-CUCC-CC-CUGCCGUU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.