miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5310 5' -56.8 NC_001798.1 + 33 0.69 0.733123
Target:  5'- cCCCCGgGGgggguguuuuuugGGGGGGGGC-GCGAAGg -3'
miRNA:   3'- -GGGGUgCUa------------CUCCCCCUGcCGUUUCg -5'
5310 5' -56.8 NC_001798.1 + 74 0.72 0.617899
Target:  5'- -gCgGCGgcGGcGGGcGGGCGGCAGGGCa -3'
miRNA:   3'- ggGgUGCuaCU-CCC-CCUGCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 1624 0.67 0.866312
Target:  5'- gCCCCGCGGcaGAGGcGcaGCGGCGgcGCg -3'
miRNA:   3'- -GGGGUGCUa-CUCC-CccUGCCGUuuCG- -5'
5310 5' -56.8 NC_001798.1 + 2259 0.72 0.617899
Target:  5'- gCgCCGCcggGGGGcGGGGCGGCGcAGCg -3'
miRNA:   3'- -GgGGUGcuaCUCC-CCCUGCCGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 2379 0.66 0.885405
Target:  5'- gCCCGCGggGcgcaguaggccuccAGGGcGGCGGCcgAGGGCg -3'
miRNA:   3'- gGGGUGCuaC--------------UCCCcCUGCCG--UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 2554 0.82 0.178926
Target:  5'- cCCCCGCGG-GAGGGGcGGCcGCGGGGCg -3'
miRNA:   3'- -GGGGUGCUaCUCCCC-CUGcCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 2588 0.66 0.887431
Target:  5'- gUCCGCGcgGcucuucuucGGGGGGC-GCGGGGCg -3'
miRNA:   3'- gGGGUGCuaCu--------CCCCCUGcCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 2669 0.75 0.418379
Target:  5'- cUCCCGCGGcgcgGAGGcGGGcGCGGC-GAGCg -3'
miRNA:   3'- -GGGGUGCUa---CUCC-CCC-UGCCGuUUCG- -5'
5310 5' -56.8 NC_001798.1 + 2762 0.69 0.78369
Target:  5'- gUCCGCGgcGGcGGcGGCGGCGGAGCu -3'
miRNA:   3'- gGGGUGCuaCUcCCcCUGCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 2995 0.69 0.755983
Target:  5'- gCCCGCGGgccccgGGcgcGGGGGcGCGGCGggccGGGCu -3'
miRNA:   3'- gGGGUGCUa-----CU---CCCCC-UGCCGU----UUCG- -5'
5310 5' -56.8 NC_001798.1 + 3197 0.74 0.499958
Target:  5'- gCCCCggccgGCGcgGAGGcGGGcGCGGCGcucAGGCg -3'
miRNA:   3'- -GGGG-----UGCuaCUCC-CCC-UGCCGU---UUCG- -5'
5310 5' -56.8 NC_001798.1 + 3888 0.7 0.688049
Target:  5'- gCCCCGgGGgcGGGGGGcCGGCcccGGGCc -3'
miRNA:   3'- -GGGGUgCUacUCCCCCuGCCGu--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 4074 0.66 0.894041
Target:  5'- gCCCGCGGUcgccGcGGGGGucCGGgcCGGGGCg -3'
miRNA:   3'- gGGGUGCUA----CuCCCCCu-GCC--GUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 4567 0.68 0.801518
Target:  5'- --gCGCGcaugGAGGGGGuccGCGGCGGAGa -3'
miRNA:   3'- gggGUGCua--CUCCCCC---UGCCGUUUCg -5'
5310 5' -56.8 NC_001798.1 + 5628 0.69 0.746525
Target:  5'- gCCCCAaag-GGGGcGGGGCcGCAGGGUa -3'
miRNA:   3'- -GGGGUgcuaCUCC-CCCUGcCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 5766 0.69 0.746525
Target:  5'- gCCCCAaag-GGGGcGGGGCcGCAGGGUa -3'
miRNA:   3'- -GGGGUgcuaCUCC-CCCUGcCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 5995 0.68 0.818755
Target:  5'- gCUgCGCGGcgGAGaccGGGACGGCAGcGGCg -3'
miRNA:   3'- -GGgGUGCUa-CUCc--CCCUGCCGUU-UCG- -5'
5310 5' -56.8 NC_001798.1 + 6224 0.69 0.755983
Target:  5'- aCCCGgGggGccggccGGGGGGACgGGCGGGGg -3'
miRNA:   3'- gGGGUgCuaC------UCCCCCUG-CCGUUUCg -5'
5310 5' -56.8 NC_001798.1 + 8295 0.69 0.73697
Target:  5'- cCCCCuccuggGGGGGGGGgGGCGAgaGGUc -3'
miRNA:   3'- -GGGGugcua-CUCCCCCUgCCGUU--UCG- -5'
5310 5' -56.8 NC_001798.1 + 8553 0.69 0.73697
Target:  5'- -gUCGCGgcGAGGGGuGGgGGCGAAGa -3'
miRNA:   3'- ggGGUGCuaCUCCCC-CUgCCGUUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.