miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 3' -50.2 NC_001798.1 + 12627 1.12 0.007845
Target:  5'- gGCGUACCCAAAACGCAAUACCGCCGAu -3'
miRNA:   3'- -CGCAUGGGUUUUGCGUUAUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 92961 0.79 0.594319
Target:  5'- uGCGUGCCCGGAACGUGGa--CGCCGu -3'
miRNA:   3'- -CGCAUGGGUUUUGCGUUaugGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 77694 0.77 0.668187
Target:  5'- aGCGcGCCCGgggcagcagcGAGCGCuggGCCGCCGGc -3'
miRNA:   3'- -CGCaUGGGU----------UUUGCGuuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 26147 0.77 0.689147
Target:  5'- -gGUGCCCAuguccccGCGCgAGUACCGCCGc -3'
miRNA:   3'- cgCAUGGGUuu-----UGCG-UUAUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 104402 0.77 0.709906
Target:  5'- aCGUugCCGuu-CGCGAggaGCCGCCGAa -3'
miRNA:   3'- cGCAugGGUuuuGCGUUa--UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 21663 0.76 0.724274
Target:  5'- gGCGUcucugucucgcugugGCCCccuuCGCGAUGCCGCCGc -3'
miRNA:   3'- -CGCA---------------UGGGuuuuGCGUUAUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 15547 0.76 0.750496
Target:  5'- cGUGUGCCCGgccccGGGCGU--UGCCGCCGc -3'
miRNA:   3'- -CGCAUGGGU-----UUUGCGuuAUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 2220 0.76 0.760391
Target:  5'- aGCGgGCCCGAGGCGCGcaGCgGgCCGAa -3'
miRNA:   3'- -CGCaUGGGUUUUGCGUuaUGgC-GGCU- -5'
5311 3' -50.2 NC_001798.1 + 106095 0.76 0.760391
Target:  5'- cGCGgcgACCCG--GCGCcgcgACCGCCGGg -3'
miRNA:   3'- -CGCa--UGGGUuuUGCGuua-UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 54688 0.75 0.770165
Target:  5'- cGCG-GCUCA--GCGCGAgGCCGCCGGg -3'
miRNA:   3'- -CGCaUGGGUuuUGCGUUaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 78157 0.75 0.779808
Target:  5'- aGCGUGCCCGGccuGCGCcGGUACgUGCCGu -3'
miRNA:   3'- -CGCAUGGGUUu--UGCG-UUAUG-GCGGCu -5'
5311 3' -50.2 NC_001798.1 + 129526 0.75 0.779808
Target:  5'- cGCGUucUCCGGGGCGCGGcccugcUGCUGCCGAc -3'
miRNA:   3'- -CGCAu-GGGUUUUGCGUU------AUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 111943 0.75 0.794939
Target:  5'- gGUGUACgCGAAGCGCGAggaaauguugacgAUCGCCGGg -3'
miRNA:   3'- -CGCAUGgGUUUUGCGUUa------------UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 53181 0.75 0.807851
Target:  5'- gGCGUcCCCGAGcgGCGCAucuUCGCCGGg -3'
miRNA:   3'- -CGCAuGGGUUU--UGCGUuauGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 75176 0.74 0.825713
Target:  5'- cCGUGCUCGAGACGCugggggcCCGCCGc -3'
miRNA:   3'- cGCAUGGGUUUUGCGuuau---GGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 47012 0.74 0.825713
Target:  5'- gGCGUGCCCGGGGa-----GCCGCCGAa -3'
miRNA:   3'- -CGCAUGGGUUUUgcguuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 43033 0.74 0.842824
Target:  5'- cGCGggGCCCcGGGCGCAaaugcggcgcGUgaGCCGCCGGc -3'
miRNA:   3'- -CGCa-UGGGuUUUGCGU----------UA--UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 123171 0.73 0.87379
Target:  5'- gGCGUACCuCAGccuCGCAgaccccgucgcgcGUGCCGUCGGa -3'
miRNA:   3'- -CGCAUGG-GUUuu-GCGU-------------UAUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 135518 0.73 0.874539
Target:  5'- cGCG-AUCCAGGACGC----CCGCCGGg -3'
miRNA:   3'- -CGCaUGGGUUUUGCGuuauGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 125496 0.73 0.888333
Target:  5'- gGCGUcgcgguggcaaaAUCCAAAaaagggacgcgcaGCGCAucGCCGCCGAg -3'
miRNA:   3'- -CGCA------------UGGGUUU-------------UGCGUuaUGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.