miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 3' -50.2 NC_001798.1 + 1342 0.71 0.942003
Target:  5'- cGCG-GCCC---GCGCAGcuCCGCCGGg -3'
miRNA:   3'- -CGCaUGGGuuuUGCGUUauGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 1414 0.66 0.996786
Target:  5'- gGCGcGCCCAggccccagcgcgcgcAGGCGCGGUGCgagugCGCCu- -3'
miRNA:   3'- -CGCaUGGGU---------------UUUGCGUUAUG-----GCGGcu -5'
5311 3' -50.2 NC_001798.1 + 1597 0.72 0.902566
Target:  5'- cGCGUGCgC---ACGCGGUACCGCaCGu -3'
miRNA:   3'- -CGCAUGgGuuuUGCGUUAUGGCG-GCu -5'
5311 3' -50.2 NC_001798.1 + 2220 0.76 0.760391
Target:  5'- aGCGgGCCCGAGGCGCGcaGCgGgCCGAa -3'
miRNA:   3'- -CGCaUGGGUUUUGCGUuaUGgC-GGCU- -5'
5311 3' -50.2 NC_001798.1 + 2372 0.66 0.995774
Target:  5'- gGCcacgGCCCGcgGGGCGCAGUaggccuccagggcgGCgGCCGAg -3'
miRNA:   3'- -CGca--UGGGU--UUUGCGUUA--------------UGgCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 3129 0.69 0.974969
Target:  5'- cGCG-GCCCGccuccGCGCGccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGUuu---UGCGUua-UGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 3282 0.67 0.99157
Target:  5'- cGCGcucgucgGCCgGcGACGCc--GCCGCCGAc -3'
miRNA:   3'- -CGCa------UGGgUuUUGCGuuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 3559 0.7 0.961575
Target:  5'- gGCGUACCCcAGguggggcacggcccGCGCcacGCUGCCGGa -3'
miRNA:   3'- -CGCAUGGGuUU--------------UGCGuuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 3757 0.67 0.99157
Target:  5'- cGCGUcGCCCAGcucgGGCGCccacacgGgCGCCGGg -3'
miRNA:   3'- -CGCA-UGGGUU----UUGCGuua----UgGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 3932 0.7 0.966058
Target:  5'- aCGUACCCGu--CGCGGUAgCGCgCGu -3'
miRNA:   3'- cGCAUGGGUuuuGCGUUAUgGCG-GCu -5'
5311 3' -50.2 NC_001798.1 + 5393 0.71 0.926627
Target:  5'- gGCGgcgGCCCGuugguCGCGccGCCGCCGc -3'
miRNA:   3'- -CGCa--UGGGUuuu--GCGUuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 7613 0.7 0.950992
Target:  5'- aGCGUGCCaacu-CGCGGcACCGCgCGGa -3'
miRNA:   3'- -CGCAUGGguuuuGCGUUaUGGCG-GCU- -5'
5311 3' -50.2 NC_001798.1 + 9199 0.7 0.950992
Target:  5'- cGCGUGCguCCGcGAugGCAAUcaguucAUCGCCGAc -3'
miRNA:   3'- -CGCAUG--GGU-UUugCGUUA------UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 9644 0.67 0.994516
Target:  5'- cCGc-CCCGAGGCGCAGcggGCCGCgCGc -3'
miRNA:   3'- cGCauGGGUUUUGCGUUa--UGGCG-GCu -5'
5311 3' -50.2 NC_001798.1 + 9994 0.68 0.988993
Target:  5'- gGCGguacGCCCAGgaacuuacGGCGCAcgGCgCGUCGGc -3'
miRNA:   3'- -CGCa---UGGGUU--------UUGCGUuaUG-GCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 10617 0.69 0.972213
Target:  5'- aGCGguUCCGGGGCGCGcAUGCaCGCCGc -3'
miRNA:   3'- -CGCauGGGUUUUGCGU-UAUG-GCGGCu -5'
5311 3' -50.2 NC_001798.1 + 10683 0.68 0.987493
Target:  5'- aGCGccACCCAcgacGGGCGCAGgggACCGCa-- -3'
miRNA:   3'- -CGCa-UGGGU----UUUGCGUUa--UGGCGgcu -5'
5311 3' -50.2 NC_001798.1 + 10808 0.69 0.974969
Target:  5'- cCGUuUCCAGGACGUucugGGUGCUGCCGc -3'
miRNA:   3'- cGCAuGGGUUUUGCG----UUAUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 11922 0.66 0.997091
Target:  5'- cGCGUugCCGuucGAAccCGCAGaagcgGCUGCCGc -3'
miRNA:   3'- -CGCAugGGU---UUU--GCGUUa----UGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 12627 1.12 0.007845
Target:  5'- gGCGUACCCAAAACGCAAUACCGCCGAu -3'
miRNA:   3'- -CGCAUGGGUUUUGCGUUAUGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.