miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 5' -62.8 NC_001798.1 + 12663 1.1 0.000628
Target:  5'- cCGCCAGGGUACUGCCGGCCAGCGCGCc -3'
miRNA:   3'- -GCGGUCCCAUGACGGCCGGUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 2262 0.82 0.064
Target:  5'- cCGCCGGGGgGCggGgCGGCgCAGCGCGCg -3'
miRNA:   3'- -GCGGUCCCaUGa-CgGCCG-GUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 24552 0.81 0.072767
Target:  5'- gCGCCGGcGGUGgUGgcggCGGCCGGCGCGCg -3'
miRNA:   3'- -GCGGUC-CCAUgACg---GCCGGUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 148677 0.79 0.103853
Target:  5'- -cCCAGGGU-CUgGCCGGCCAGaCGUGCu -3'
miRNA:   3'- gcGGUCCCAuGA-CGGCCGGUC-GCGCG- -5'
5311 5' -62.8 NC_001798.1 + 102999 0.78 0.108934
Target:  5'- aCGCCGGGGgcccaggUGC-GcCCGGCCAGCGCGa -3'
miRNA:   3'- -GCGGUCCC-------AUGaC-GGCCGGUCGCGCg -5'
5311 5' -62.8 NC_001798.1 + 28983 0.78 0.117726
Target:  5'- cCGCCccAGGGgGCggcGCCGGCCAaccGCGCGCc -3'
miRNA:   3'- -GCGG--UCCCaUGa--CGGCCGGU---CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 149244 0.78 0.120701
Target:  5'- cCGCgGGGGcgucGCCGGCCGGCGCGg -3'
miRNA:   3'- -GCGgUCCCaugaCGGCCGGUCGCGCg -5'
5311 5' -62.8 NC_001798.1 + 1651 0.78 0.120701
Target:  5'- gCGUCGGGGUACaggcgcgcgUGCgCGGCCuccacGCGCGCg -3'
miRNA:   3'- -GCGGUCCCAUG---------ACG-GCCGGu----CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 25083 0.78 0.126861
Target:  5'- gGCCAGGGcGCcGCCGGgCGGCGCcccGCg -3'
miRNA:   3'- gCGGUCCCaUGaCGGCCgGUCGCG---CG- -5'
5311 5' -62.8 NC_001798.1 + 25802 0.77 0.136648
Target:  5'- gCGCCGuggaguuccuGGG-GCUGCUGGCCGGCGCcuGCg -3'
miRNA:   3'- -GCGGU----------CCCaUGACGGCCGGUCGCG--CG- -5'
5311 5' -62.8 NC_001798.1 + 27933 0.76 0.154511
Target:  5'- cCGCCGGGGUcccgGC-GCCGGCCGcGCcccgGCGCu -3'
miRNA:   3'- -GCGGUCCCA----UGaCGGCCGGU-CG----CGCG- -5'
5311 5' -62.8 NC_001798.1 + 75456 0.76 0.158328
Target:  5'- gGCCGGGGUG--GCCGGCCcGGC-CGCg -3'
miRNA:   3'- gCGGUCCCAUgaCGGCCGG-UCGcGCG- -5'
5311 5' -62.8 NC_001798.1 + 131020 0.76 0.170297
Target:  5'- cCGCCAGGcG-ACggGCCGcauCCAGCGCGCg -3'
miRNA:   3'- -GCGGUCC-CaUGa-CGGCc--GGUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 36401 0.75 0.183068
Target:  5'- gCGCCGGGGcccccCUGCCGGgCGGgGCGg -3'
miRNA:   3'- -GCGGUCCCau---GACGGCCgGUCgCGCg -5'
5311 5' -62.8 NC_001798.1 + 111131 0.75 0.18751
Target:  5'- gCGCagCAGGGcggcGCUGUCGGCCcGCGCGUc -3'
miRNA:   3'- -GCG--GUCCCa---UGACGGCCGGuCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 34978 0.75 0.18751
Target:  5'- cCGCCGaGGUGCggggGCCccuccGGCCGGgGCGCa -3'
miRNA:   3'- -GCGGUcCCAUGa---CGG-----CCGGUCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 24410 0.75 0.196679
Target:  5'- cCGUCGGcGGcgGCgucGCCGGCCgacgAGCGCGCg -3'
miRNA:   3'- -GCGGUC-CCa-UGa--CGGCCGG----UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 4098 0.74 0.210668
Target:  5'- gGCCGGGGcggGCUcggcccugggcggGCuCGGCCGGgGCGCc -3'
miRNA:   3'- gCGGUCCCa--UGA-------------CG-GCCGGUCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 55750 0.74 0.211165
Target:  5'- cCGCaCGGGGgauaagGgUGGCCGGCGCGCu -3'
miRNA:   3'- -GCG-GUCCCauga--CgGCCGGUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 25926 0.74 0.211165
Target:  5'- gGCCugcGaGGUGCUGCCcGCCGGCaGUGCg -3'
miRNA:   3'- gCGGu--C-CCAUGACGGcCGGUCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.