miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 5' -62.8 NC_001798.1 + 1288 0.66 0.596169
Target:  5'- aGCgGGGGcGCgucGCCGucgggcucgagcagcGCCcGCGCGCa -3'
miRNA:   3'- gCGgUCCCaUGa--CGGC---------------CGGuCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 1651 0.78 0.120701
Target:  5'- gCGUCGGGGUACaggcgcgcgUGCgCGGCCuccacGCGCGCg -3'
miRNA:   3'- -GCGGUCCCAUG---------ACG-GCCGGu----CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 1722 0.72 0.289311
Target:  5'- gGCCAGcacggugcggcgcaGGUcccgcGCcGCCGGCCAGCGCa- -3'
miRNA:   3'- gCGGUC--------------CCA-----UGaCGGCCGGUCGCGcg -5'
5311 5' -62.8 NC_001798.1 + 1797 0.71 0.313983
Target:  5'- gGCCAGGuaggcGUGCUGCCGcgagaccacgggcccGUCGGCGgGCc -3'
miRNA:   3'- gCGGUCC-----CAUGACGGC---------------CGGUCGCgCG- -5'
5311 5' -62.8 NC_001798.1 + 2206 0.69 0.434888
Target:  5'- cCGCCGcGcGGcGCaGCgGGCCcgaGGCGCGCa -3'
miRNA:   3'- -GCGGU-C-CCaUGaCGgCCGG---UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 2262 0.82 0.064
Target:  5'- cCGCCGGGGgGCggGgCGGCgCAGCGCGCg -3'
miRNA:   3'- -GCGGUCCCaUGa-CgGCCG-GUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 2400 0.7 0.40137
Target:  5'- -uCCAGGGcgGCgGCCGagggcGCCGGCGUGUg -3'
miRNA:   3'- gcGGUCCCa-UGaCGGC-----CGGUCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 2470 0.69 0.409595
Target:  5'- gGUCGGGGcccucgGCggGCCGGCggguCAGCGcCGCg -3'
miRNA:   3'- gCGGUCCCa-----UGa-CGGCCG----GUCGC-GCG- -5'
5311 5' -62.8 NC_001798.1 + 2705 0.68 0.488045
Target:  5'- gGCCGcGGcgACggUGUCGGCCAGCaggggGCGCa -3'
miRNA:   3'- gCGGUcCCa-UG--ACGGCCGGUCG-----CGCG- -5'
5311 5' -62.8 NC_001798.1 + 2858 0.7 0.40137
Target:  5'- gGCCAcGGcggccucgcUGCcGCCGGCCA-CGCGCa -3'
miRNA:   3'- gCGGUcCC---------AUGaCGGCCGGUcGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 2980 0.69 0.434888
Target:  5'- gCGgCGGGGcg--GCCGGCCcGCGgGCc -3'
miRNA:   3'- -GCgGUCCCaugaCGGCCGGuCGCgCG- -5'
5311 5' -62.8 NC_001798.1 + 3267 0.71 0.311241
Target:  5'- aGCCGGcGGgcaccgcgcGCUcGUCGGCCGGCGaCGCc -3'
miRNA:   3'- gCGGUC-CCa--------UGA-CGGCCGGUCGC-GCG- -5'
5311 5' -62.8 NC_001798.1 + 3386 0.73 0.266188
Target:  5'- uCGUCGGGGguucGCgccCCGGUCAGCGcCGCg -3'
miRNA:   3'- -GCGGUCCCa---UGac-GGCCGGUCGC-GCG- -5'
5311 5' -62.8 NC_001798.1 + 3728 0.67 0.553619
Target:  5'- aGCCgcgugaucaGGGcGUACUGCUGcGCC-GCGuCGCc -3'
miRNA:   3'- gCGG---------UCC-CAUGACGGC-CGGuCGC-GCG- -5'
5311 5' -62.8 NC_001798.1 + 3849 0.74 0.216194
Target:  5'- gGCCGGGGcgGCUGUCGcCCAGCcCGCc -3'
miRNA:   3'- gCGGUCCCa-UGACGGCcGGUCGcGCG- -5'
5311 5' -62.8 NC_001798.1 + 4019 0.68 0.497205
Target:  5'- gGCCcguGGcGUcGCgGCCGGCCAccGCcGCGCg -3'
miRNA:   3'- gCGGu--CC-CA-UGaCGGCCGGU--CG-CGCG- -5'
5311 5' -62.8 NC_001798.1 + 4098 0.74 0.210668
Target:  5'- gGCCGGGGcggGCUcggcccugggcggGCuCGGCCGGgGCGCc -3'
miRNA:   3'- gCGGUCCCa--UGA-------------CG-GCCGGUCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 5164 0.67 0.57287
Target:  5'- gCGCCGaucGGGUAgaucCUGgCGGCCgcgucgguAGCcGCGCu -3'
miRNA:   3'- -GCGGU---CCCAU----GACgGCCGG--------UCG-CGCG- -5'
5311 5' -62.8 NC_001798.1 + 6225 0.66 0.602019
Target:  5'- -cCCGGGGg---GCCGGCCGGggggaCGgGCg -3'
miRNA:   3'- gcGGUCCCaugaCGGCCGGUC-----GCgCG- -5'
5311 5' -62.8 NC_001798.1 + 6359 0.7 0.39325
Target:  5'- gGCCGGGGggACggGCCggggGGCCGGgGgGCc -3'
miRNA:   3'- gCGGUCCCa-UGa-CGG----CCGGUCgCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.