miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 10770 1.1 0.00295
Target:  5'- gGCGCCGGAAGCAACACCACGUCCUCGc -3'
miRNA:   3'- -CGCGGCCUUCGUUGUGGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 12715 0.75 0.487883
Target:  5'- gGCGgCGGggGCGuggugcgGCGCgACGUCCUgGa -3'
miRNA:   3'- -CGCgGCCuuCGU-------UGUGgUGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 14185 0.67 0.867252
Target:  5'- cCGCgUGGggGCAGCACCuCGccaaCUCGc -3'
miRNA:   3'- cGCG-GCCuuCGUUGUGGuGCag--GAGC- -5'
5312 3' -56 NC_001798.1 + 15111 0.68 0.844197
Target:  5'- -gGCCGGuGGC-GCugUcguCGUCCUCGg -3'
miRNA:   3'- cgCGGCCuUCGuUGugGu--GCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 15210 0.66 0.907648
Target:  5'- -aGCCGGggGgAGCGuCCGCGggUCCgugUGg -3'
miRNA:   3'- cgCGGCCuuCgUUGU-GGUGC--AGGa--GC- -5'
5312 3' -56 NC_001798.1 + 16140 0.68 0.859767
Target:  5'- gGCGgaauaccauaCCGGggGCAccgaGCGCCACGggcggCCcgCGg -3'
miRNA:   3'- -CGC----------GGCCuuCGU----UGUGGUGCa----GGa-GC- -5'
5312 3' -56 NC_001798.1 + 16631 0.71 0.656581
Target:  5'- cGCGCCGG-GGCAGgucuugcCGCCcgGCGUCCgCGg -3'
miRNA:   3'- -CGCGGCCuUCGUU-------GUGG--UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 16999 0.67 0.895072
Target:  5'- gGCGCUuGGgcGgAGCGCCGCGUCa--- -3'
miRNA:   3'- -CGCGG-CCuuCgUUGUGGUGCAGgagc -5'
5312 3' -56 NC_001798.1 + 17977 0.68 0.859767
Target:  5'- aCGUCGGggGgGGCugCGCGgCC-CGg -3'
miRNA:   3'- cGCGGCCuuCgUUGugGUGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 19301 0.67 0.881596
Target:  5'- gGCGaCCGGGAacGCAGCugucuucgcugGCUACGgucCCUCGu -3'
miRNA:   3'- -CGC-GGCCUU--CGUUG-----------UGGUGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 19787 0.73 0.566757
Target:  5'- gGCGgCGGGgaAGCGcauuuuucgGCACC-CGUCCUCGc -3'
miRNA:   3'- -CGCgGCCU--UCGU---------UGUGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 19985 0.66 0.907648
Target:  5'- cCGCCGGAcGCGGauuCCGgGUUCUCc -3'
miRNA:   3'- cGCGGCCUuCGUUgu-GGUgCAGGAGc -5'
5312 3' -56 NC_001798.1 + 20770 0.7 0.755295
Target:  5'- cCGCgGGGAGCGACggcgcccGCCGCGUaggucucccgCCUCa -3'
miRNA:   3'- cGCGgCCUUCGUUG-------UGGUGCA----------GGAGc -5'
5312 3' -56 NC_001798.1 + 22406 0.73 0.560777
Target:  5'- -aGCCGGGgcgcGGCGGCGucgaucgcuccuccuCCGCGUCCUCc -3'
miRNA:   3'- cgCGGCCU----UCGUUGU---------------GGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 22953 0.68 0.819446
Target:  5'- cGUGCCGacGAGGCGGCcCCGgCGUCCg-- -3'
miRNA:   3'- -CGCGGC--CUUCGUUGuGGU-GCAGGagc -5'
5312 3' -56 NC_001798.1 + 23573 0.68 0.844197
Target:  5'- gGCcCCGGggGCGGCGCCcCGgCCg-- -3'
miRNA:   3'- -CGcGGCCuuCGUUGUGGuGCaGGagc -5'
5312 3' -56 NC_001798.1 + 23684 0.75 0.451763
Target:  5'- -gGCCGGccGCGACGCCACGggccgCUUCa -3'
miRNA:   3'- cgCGGCCuuCGUUGUGGUGCa----GGAGc -5'
5312 3' -56 NC_001798.1 + 24477 0.66 0.930023
Target:  5'- uCGCCGcccuGggGCGccugaGCGCCGCGcccgCCUCc -3'
miRNA:   3'- cGCGGC----CuuCGU-----UGUGGUGCa---GGAGc -5'
5312 3' -56 NC_001798.1 + 24576 0.68 0.85208
Target:  5'- gGCGCgCGGAGGCGG-GCCGCGUggCCg-- -3'
miRNA:   3'- -CGCG-GCCUUCGUUgUGGUGCA--GGagc -5'
5312 3' -56 NC_001798.1 + 25279 0.7 0.717573
Target:  5'- cCGCCGGGgcccAGCcacACGCCGgCGcCCUCGg -3'
miRNA:   3'- cGCGGCCU----UCGu--UGUGGU-GCaGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.