miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 976 0.68 0.859767
Target:  5'- cGCGCgCGGc--CAuCGCCGCGUCUUCu -3'
miRNA:   3'- -CGCG-GCCuucGUuGUGGUGCAGGAGc -5'
5312 3' -56 NC_001798.1 + 1241 0.68 0.827874
Target:  5'- aGCGUaucugCGGggGCGggcccGCGuCCGCGUCgUCGc -3'
miRNA:   3'- -CGCG-----GCCuuCGU-----UGU-GGUGCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 1430 0.7 0.717573
Target:  5'- aGCGCgCGcAGGCGcggugcgaguGCGCCuCGUCCUCGc -3'
miRNA:   3'- -CGCG-GCcUUCGU----------UGUGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 1479 0.68 0.85208
Target:  5'- cGCGCCGGGcgccauGGCGucGC-CCGCGcCCgaggCGg -3'
miRNA:   3'- -CGCGGCCU------UCGU--UGuGGUGCaGGa---GC- -5'
5312 3' -56 NC_001798.1 + 1531 0.81 0.215108
Target:  5'- aGCGCCGGGAGCAcgGCGCgGCGguaCUCGc -3'
miRNA:   3'- -CGCGGCCUUCGU--UGUGgUGCag-GAGC- -5'
5312 3' -56 NC_001798.1 + 1712 0.66 0.907648
Target:  5'- cGCgGCCGGAGGcCAGCACggugcggcgCAgGUCC-CGc -3'
miRNA:   3'- -CG-CGGCCUUC-GUUGUG---------GUgCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 1890 0.67 0.895072
Target:  5'- gGCGCCGGccAGCAGCcccaggaacuCCACGgcgCCggCGa -3'
miRNA:   3'- -CGCGGCCu-UCGUUGu---------GGUGCa--GGa-GC- -5'
5312 3' -56 NC_001798.1 + 2499 0.68 0.827874
Target:  5'- aGCGCCGcGggGCGcgGCGgCCGCGgcggcggCgUCGg -3'
miRNA:   3'- -CGCGGC-CuuCGU--UGU-GGUGCa------GgAGC- -5'
5312 3' -56 NC_001798.1 + 3144 0.72 0.646464
Target:  5'- cGCGCCGGccGCcgccaccaccgccGGCGCCGuCGUCgUCGu -3'
miRNA:   3'- -CGCGGCCuuCG-------------UUGUGGU-GCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 3259 0.67 0.881596
Target:  5'- gGCGCCGu-AGCcggcgGGCACCGCG-CgCUCGu -3'
miRNA:   3'- -CGCGGCcuUCG-----UUGUGGUGCaG-GAGC- -5'
5312 3' -56 NC_001798.1 + 3386 0.77 0.373623
Target:  5'- uCGUCGGggGUucgcgccccggucAGCGCCGCGUUCUCGc -3'
miRNA:   3'- cGCGGCCuuCG-------------UUGUGGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 3625 0.8 0.260596
Target:  5'- cGCGCCcgagauccGGAAGCAggccugguccaGCGCCACGUCCcCGg -3'
miRNA:   3'- -CGCGG--------CCUUCGU-----------UGUGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 3785 0.67 0.881596
Target:  5'- gGCGCCGGG----GCGCC-CGaggCCUCGa -3'
miRNA:   3'- -CGCGGCCUucguUGUGGuGCa--GGAGC- -5'
5312 3' -56 NC_001798.1 + 3961 0.79 0.27313
Target:  5'- gGCGCCGGAGGCcGCGuCgGCGUCCagcUCGa -3'
miRNA:   3'- -CGCGGCCUUCGuUGU-GgUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 4215 0.66 0.901474
Target:  5'- gGCGCuggCGGggGCGcGgGCgGCGUCgUCGu -3'
miRNA:   3'- -CGCG---GCCuuCGU-UgUGgUGCAGgAGC- -5'
5312 3' -56 NC_001798.1 + 4414 0.66 0.919302
Target:  5'- gGCGCCGGGggucgcGGCGACaggcugGCCAUgggGUCCg-- -3'
miRNA:   3'- -CGCGGCCU------UCGUUG------UGGUG---CAGGagc -5'
5312 3' -56 NC_001798.1 + 6675 0.7 0.760025
Target:  5'- -gGCCGGgcGCcgccuucguggacggGACACCAUGUCUUgGg -3'
miRNA:   3'- cgCGGCCuuCG---------------UUGUGGUGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 8734 0.66 0.919302
Target:  5'- uGCGCacgaGGAAGUcguuGGCgGCCuCGUCUUCGc -3'
miRNA:   3'- -CGCGg---CCUUCG----UUG-UGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 9167 0.67 0.894419
Target:  5'- cGCGCCGGGgggcagggucucuGGCGGguCCccgcguGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU-------------UCGUUguGG------UGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 9731 0.68 0.819446
Target:  5'- gGCGCUGGggGaggugcuguucCAcCACCGCGUUC-CGg -3'
miRNA:   3'- -CGCGGCCuuC-----------GUuGUGGUGCAGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.