miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 10770 1.1 0.00295
Target:  5'- gGCGCCGGAAGCAACACCACGUCCUCGc -3'
miRNA:   3'- -CGCGGCCUUCGUUGUGGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 151621 0.87 0.095461
Target:  5'- cGgGCCGGggGCGugGCCGCGUCCaUCa -3'
miRNA:   3'- -CgCGGCCuuCGUugUGGUGCAGG-AGc -5'
5312 3' -56 NC_001798.1 + 79957 0.84 0.148061
Target:  5'- gGCGuCCGGAgcGGCGGCGCCGCGUCCg-- -3'
miRNA:   3'- -CGC-GGCCU--UCGUUGUGGUGCAGGagc -5'
5312 3' -56 NC_001798.1 + 1531 0.81 0.215108
Target:  5'- aGCGCCGGGAGCAcgGCGCgGCGguaCUCGc -3'
miRNA:   3'- -CGCGGCCUUCGU--UGUGgUGCag-GAGC- -5'
5312 3' -56 NC_001798.1 + 3625 0.8 0.260596
Target:  5'- cGCGCCcgagauccGGAAGCAggccugguccaGCGCCACGUCCcCGg -3'
miRNA:   3'- -CGCGG--------CCUUCGU-----------UGUGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 3961 0.79 0.27313
Target:  5'- gGCGCCGGAGGCcGCGuCgGCGUCCagcUCGa -3'
miRNA:   3'- -CGCGGCCUUCGuUGU-GgUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 28208 0.79 0.279577
Target:  5'- gGCGCCGGAGGCcccgcACGCCGCG-CCUg- -3'
miRNA:   3'- -CGCGGCCUUCGu----UGUGGUGCaGGAgc -5'
5312 3' -56 NC_001798.1 + 28351 0.79 0.279577
Target:  5'- uGCGCCGGcGGCGGCcccCCGCGUCCcCGc -3'
miRNA:   3'- -CGCGGCCuUCGUUGu--GGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 43078 0.79 0.292831
Target:  5'- cGCGCCGGGcucgGGCGccgcCGCCGCGUCCgCGa -3'
miRNA:   3'- -CGCGGCCU----UCGUu---GUGGUGCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 3386 0.77 0.373623
Target:  5'- uCGUCGGggGUucgcgccccggucAGCGCCGCGUUCUCGc -3'
miRNA:   3'- cGCGGCCuuCG-------------UUGUGGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 93281 0.76 0.40769
Target:  5'- gGCGCCGucGggGCGuaccuggcgcGCGCCGCGggCCUCGu -3'
miRNA:   3'- -CGCGGC--CuuCGU----------UGUGGUGCa-GGAGC- -5'
5312 3' -56 NC_001798.1 + 69512 0.76 0.433816
Target:  5'- cGCGCCGGAgcggGGCGugGCCcGCGagCUCGc -3'
miRNA:   3'- -CGCGGCCU----UCGUugUGG-UGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 23684 0.75 0.451763
Target:  5'- -gGCCGGccGCGACGCCACGggccgCUUCa -3'
miRNA:   3'- cgCGGCCuuCGUUGUGGUGCa----GGAGc -5'
5312 3' -56 NC_001798.1 + 93126 0.75 0.460888
Target:  5'- cGgGCgGGuuuGAGCAGCGCCugG-CCUCGg -3'
miRNA:   3'- -CgCGgCC---UUCGUUGUGGugCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 53910 0.75 0.470109
Target:  5'- cGCGCCaccuGGAccgcgggcccAGCGGCACCACGggCUCGa -3'
miRNA:   3'- -CGCGG----CCU----------UCGUUGUGGUGCagGAGC- -5'
5312 3' -56 NC_001798.1 + 12715 0.75 0.487883
Target:  5'- gGCGgCGGggGCGuggugcgGCGCgACGUCCUgGa -3'
miRNA:   3'- -CGCgGCCuuCGU-------UGUGgUGCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 91085 0.74 0.495462
Target:  5'- cGCGCCGGAGGCggccGucguggaccccgguGCGCUgcuccgcggggGCGUCCUCGu -3'
miRNA:   3'- -CGCGGCCUUCG----U--------------UGUGG-----------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 144124 0.74 0.507888
Target:  5'- uCGUCGGggGUAcaAUACCGCGUCCa-- -3'
miRNA:   3'- cGCGGCCuuCGU--UGUGGUGCAGGagc -5'
5312 3' -56 NC_001798.1 + 153084 0.74 0.527256
Target:  5'- aGCGgCGG-GGCGGCGCCGgGcCCUCGc -3'
miRNA:   3'- -CGCgGCCuUCGUUGUGGUgCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 28788 0.73 0.5568
Target:  5'- gGCGgCGGcGGCGGCGCgCGgGUCCUCc -3'
miRNA:   3'- -CGCgGCCuUCGUUGUG-GUgCAGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.