miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5313 3' -55.3 NC_001798.1 + 10097 1.05 0.006204
Target:  5'- gCACGAGGACGGCACGUCAAACCGCAUc -3'
miRNA:   3'- -GUGCUCCUGCCGUGCAGUUUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 142947 0.77 0.364763
Target:  5'- aCACGGGGACGGC-CGggcaGAGCCGCc- -3'
miRNA:   3'- -GUGCUCCUGCCGuGCag--UUUGGCGua -5'
5313 3' -55.3 NC_001798.1 + 27486 0.76 0.415429
Target:  5'- gCGCGGGGGCgGGCGCGggaaaaAAGCCGCGc -3'
miRNA:   3'- -GUGCUCCUG-CCGUGCag----UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 150371 0.76 0.433251
Target:  5'- gCACGGcGGGCGGCGCGggcCcGGCCGCGUc -3'
miRNA:   3'- -GUGCU-CCUGCCGUGCa--GuUUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 78379 0.76 0.433251
Target:  5'- aGCGAGGACGcGCugGUCGcGugCGCGg -3'
miRNA:   3'- gUGCUCCUGC-CGugCAGU-UugGCGUa -5'
5313 3' -55.3 NC_001798.1 + 22768 0.75 0.45151
Target:  5'- gACGAGGACGGgggACGUCuccGGGCCGCGg -3'
miRNA:   3'- gUGCUCCUGCCg--UGCAG---UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 71051 0.74 0.53835
Target:  5'- uCGCGAGGAgGuGCGCGUgucgaccgcccUAAGCCGCGUc -3'
miRNA:   3'- -GUGCUCCUgC-CGUGCA-----------GUUUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 27029 0.73 0.548385
Target:  5'- gGCGGGGgucgggcggGCGGCACGUCuc-CCGCGc -3'
miRNA:   3'- gUGCUCC---------UGCCGUGCAGuuuGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 31148 0.73 0.548385
Target:  5'- gCGCGGGGGCGGCgguGCGggggCGAcCCGCGg -3'
miRNA:   3'- -GUGCUCCUGCCG---UGCa---GUUuGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 153966 0.73 0.548385
Target:  5'- aGCGAGGAcgcggcCGGCGCGcUCucGACCGCGg -3'
miRNA:   3'- gUGCUCCU------GCCGUGC-AGu-UUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 87189 0.73 0.568621
Target:  5'- gGCGAcGGGCGGCugGcCAccgucAGCCGCGa -3'
miRNA:   3'- gUGCU-CCUGCCGugCaGU-----UUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 22992 0.73 0.57881
Target:  5'- gACGAgccugccgcGGACGGCGuCGUCucGCCGCGg -3'
miRNA:   3'- gUGCU---------CCUGCCGU-GCAGuuUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 12557 0.73 0.589038
Target:  5'- uGCGAGGGgGGCGCGUCGucaucCCGgAUg -3'
miRNA:   3'- gUGCUCCUgCCGUGCAGUuu---GGCgUA- -5'
5313 3' -55.3 NC_001798.1 + 134553 0.72 0.609582
Target:  5'- gACGAGGACcGCGCGUUuuGCgCGCGa -3'
miRNA:   3'- gUGCUCCUGcCGUGCAGuuUG-GCGUa -5'
5313 3' -55.3 NC_001798.1 + 26503 0.72 0.609582
Target:  5'- gCGCGGGGACGGUGCu---GGCCGCGg -3'
miRNA:   3'- -GUGCUCCUGCCGUGcaguUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 107463 0.72 0.630195
Target:  5'- -cCGAGGACGGCGCGgggucUCugccCCGCAUc -3'
miRNA:   3'- guGCUCCUGCCGUGC-----AGuuu-GGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 25585 0.72 0.640507
Target:  5'- gGCGAGGACcuGGC-CG-CGGGCCGCGc -3'
miRNA:   3'- gUGCUCCUG--CCGuGCaGUUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 111130 0.72 0.640507
Target:  5'- aGCGcagcAGGGCGGCGCuGUCGGcCCGCGc -3'
miRNA:   3'- gUGC----UCCUGCCGUG-CAGUUuGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 43032 0.71 0.668294
Target:  5'- gCGCGGGGccccgggcgcaaauGCGGCGCGU-GAGCCGCc- -3'
miRNA:   3'- -GUGCUCC--------------UGCCGUGCAgUUUGGCGua -5'
5313 3' -55.3 NC_001798.1 + 46479 0.71 0.691799
Target:  5'- aGCGGGGACGGCGCc---AACUGCGg -3'
miRNA:   3'- gUGCUCCUGCCGUGcaguUUGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.