miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5313 3' -55.3 NC_001798.1 + 69 0.67 0.872795
Target:  5'- gGCGGGcGGCGGCGgCGggCGGGCgGCAg -3'
miRNA:   3'- gUGCUC-CUGCCGU-GCa-GUUUGgCGUa -5'
5313 3' -55.3 NC_001798.1 + 1249 0.66 0.91281
Target:  5'- uGCGGGGGCGGgcccgcgucCGCGUCGucgCGCAg -3'
miRNA:   3'- gUGCUCCUGCC---------GUGCAGUuugGCGUa -5'
5313 3' -55.3 NC_001798.1 + 1637 0.7 0.760257
Target:  5'- gGCGcAGcGGCGGCGCGUCGggguacaGGCgCGCGUg -3'
miRNA:   3'- gUGC-UC-CUGCCGUGCAGU-------UUG-GCGUA- -5'
5313 3' -55.3 NC_001798.1 + 2483 0.69 0.798537
Target:  5'- gGCG-GGcCGGCGgGUCAGcGCCGCGg -3'
miRNA:   3'- gUGCuCCuGCCGUgCAGUU-UGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 2684 0.66 0.929611
Target:  5'- gGCGGGcGCGGCGagcgaGUCG-GCCGCGg -3'
miRNA:   3'- gUGCUCcUGCCGUg----CAGUuUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 4442 0.66 0.934726
Target:  5'- cCAUGGGGuccgGGUACGccccgCGGACCGCGg -3'
miRNA:   3'- -GUGCUCCug--CCGUGCa----GUUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 9092 0.67 0.900405
Target:  5'- gGCGuGGAgGGcCACGggaaAGGCCGCGg -3'
miRNA:   3'- gUGCuCCUgCC-GUGCag--UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 9129 0.67 0.864575
Target:  5'- cCGCGAGGuggucuGCGGCACG-CGGgcgcggcGCCGCc- -3'
miRNA:   3'- -GUGCUCC------UGCCGUGCaGUU-------UGGCGua -5'
5313 3' -55.3 NC_001798.1 + 10097 1.05 0.006204
Target:  5'- gCACGAGGACGGCACGUCAAACCGCAUc -3'
miRNA:   3'- -GUGCUCCUGCCGUGCAGUUUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 12557 0.73 0.589038
Target:  5'- uGCGAGGGgGGCGCGUCGucaucCCGgAUg -3'
miRNA:   3'- gUGCUCCUgCCGUGCAGUuu---GGCgUA- -5'
5313 3' -55.3 NC_001798.1 + 15872 0.68 0.857659
Target:  5'- -uCGGGGucuguccgcAgGGCGCGUCgAAACCGCGg -3'
miRNA:   3'- guGCUCC---------UgCCGUGCAG-UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 15906 0.67 0.872795
Target:  5'- gGCGGGGugGGaaggggGCGUaCGGACCGuCAUc -3'
miRNA:   3'- gUGCUCCugCCg-----UGCA-GUUUGGC-GUA- -5'
5313 3' -55.3 NC_001798.1 + 16498 0.68 0.841695
Target:  5'- gCGCGGGuGAgcCGGUaguACGUCAcacgGGCCGCAUa -3'
miRNA:   3'- -GUGCUC-CU--GCCG---UGCAGU----UUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 20770 0.66 0.929611
Target:  5'- cCGCGGGGAgcgaCGGCGCcc---GCCGCGUa -3'
miRNA:   3'- -GUGCUCCU----GCCGUGcaguuUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 20881 0.67 0.872795
Target:  5'- gGgGAGGACGGgGCGUCugcgcuuCCGUg- -3'
miRNA:   3'- gUgCUCCUGCCgUGCAGuuu----GGCGua -5'
5313 3' -55.3 NC_001798.1 + 22301 0.67 0.887057
Target:  5'- aGCGGcGGCGGCGCGaccaaCGGGCCGCc- -3'
miRNA:   3'- gUGCUcCUGCCGUGCa----GUUUGGCGua -5'
5313 3' -55.3 NC_001798.1 + 22336 0.66 0.934726
Target:  5'- gACGcGGACGcGCggGCGUCGgggcggGGCCGCGc -3'
miRNA:   3'- gUGCuCCUGC-CG--UGCAGU------UUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 22768 0.75 0.45151
Target:  5'- gACGAGGACGGgggACGUCuccGGGCCGCGg -3'
miRNA:   3'- gUGCUCCUGCCg--UGCAG---UUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 22992 0.73 0.57881
Target:  5'- gACGAgccugccgcGGACGGCGuCGUCucGCCGCGg -3'
miRNA:   3'- gUGCU---------CCUGCCGU-GCAGuuUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 24566 0.71 0.701942
Target:  5'- gGCGGcGGcCGGCGCGcggaggCGGGCCGCGUg -3'
miRNA:   3'- gUGCU-CCuGCCGUGCa-----GUUUGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.