miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5314 5' -57.9 NC_001798.1 + 9988 1.06 0.002615
Target:  5'- cCGCCAGGCGGUACGCCCAGGAACUUAc -3'
miRNA:   3'- -GCGGUCCGCCAUGCGGGUCCUUGAAU- -5'
5314 5' -57.9 NC_001798.1 + 111023 0.77 0.249484
Target:  5'- gGCCAGGCGuccGUggccggcguacaacACGCCCAGGAACg-- -3'
miRNA:   3'- gCGGUCCGC---CA--------------UGCGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 111811 0.76 0.303099
Target:  5'- gCGCCGGucGCGG-GCGUCCAGGGGCUg- -3'
miRNA:   3'- -GCGGUC--CGCCaUGCGGGUCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 152242 0.73 0.421288
Target:  5'- cCGCUcgGGGCcggGGUcCGCCCGGGAGCUc- -3'
miRNA:   3'- -GCGG--UCCG---CCAuGCGGGUCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 29916 0.73 0.439026
Target:  5'- uCG-CGGGCGGUGgGCUCGGGGGCg-- -3'
miRNA:   3'- -GCgGUCCGCCAUgCGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 76771 0.73 0.448053
Target:  5'- gCGCCaAGGUGGcccacgACGCCCGGGAGa--- -3'
miRNA:   3'- -GCGG-UCCGCCa-----UGCGGGUCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 102999 0.72 0.465484
Target:  5'- aCGCCGGGggcccaGGUGCGCCCGGccagcgcGAGCUc- -3'
miRNA:   3'- -GCGGUCCg-----CCAUGCGGGUC-------CUUGAau -5'
5314 5' -57.9 NC_001798.1 + 144059 0.72 0.475735
Target:  5'- aCGCCAGGCcGUGCGCCUggccGGGAUg-- -3'
miRNA:   3'- -GCGGUCCGcCAUGCGGGu---CCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 34852 0.72 0.484205
Target:  5'- cCGCCGGGCGGgggACGCCUuccgcccggcgccGGGcGGCUa- -3'
miRNA:   3'- -GCGGUCCGCCa--UGCGGG-------------UCC-UUGAau -5'
5314 5' -57.9 NC_001798.1 + 44159 0.72 0.494654
Target:  5'- aCGCCcGGCGGUACGCCCcc-AGCa-- -3'
miRNA:   3'- -GCGGuCCGCCAUGCGGGuccUUGaau -5'
5314 5' -57.9 NC_001798.1 + 39229 0.71 0.543338
Target:  5'- gGCCAGcaCGGga-GCCCAGGGGCUg- -3'
miRNA:   3'- gCGGUCc-GCCaugCGGGUCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 29404 0.7 0.583377
Target:  5'- gCGCC-GGCGGgGCGCCgGgGGGACUc- -3'
miRNA:   3'- -GCGGuCCGCCaUGCGGgU-CCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 111896 0.7 0.59349
Target:  5'- aGCCGGGggaGGUGCGCCUGGGccagGGCg-- -3'
miRNA:   3'- gCGGUCCg--CCAUGCGGGUCC----UUGaau -5'
5314 5' -57.9 NC_001798.1 + 67639 0.7 0.59349
Target:  5'- gGCaGGGCGGUugGCCauuGGAACc-- -3'
miRNA:   3'- gCGgUCCGCCAugCGGgu-CCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 79292 0.7 0.600586
Target:  5'- gGCCccguGGGCGGUggaggaguuccgggGCGCgCGGGAACUc- -3'
miRNA:   3'- gCGG----UCCGCCA--------------UGCGgGUCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 77870 0.69 0.623968
Target:  5'- aCGCCgAGGCGGUcacccuCGCCCuGGAuACg-- -3'
miRNA:   3'- -GCGG-UCCGCCAu-----GCGGGuCCU-UGaau -5'
5314 5' -57.9 NC_001798.1 + 135230 0.69 0.623968
Target:  5'- gGCCGGGCugccGGaa-GCCCGGGGGCg-- -3'
miRNA:   3'- gCGGUCCG----CCaugCGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 111651 0.69 0.634149
Target:  5'- gCGCUcggcggggGGGCGGaagagACGCUCGGGGACa-- -3'
miRNA:   3'- -GCGG--------UCCGCCa----UGCGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 93981 0.69 0.634149
Target:  5'- gGaCCAGGCGGUGCccacgGCCCuGGGgagGCUg- -3'
miRNA:   3'- gC-GGUCCGCCAUG-----CGGGuCCU---UGAau -5'
5314 5' -57.9 NC_001798.1 + 37169 0.69 0.664652
Target:  5'- cCGCCuGGCGGgccgcucgGCGCgCCAGGcGCc-- -3'
miRNA:   3'- -GCGGuCCGCCa-------UGCG-GGUCCuUGaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.