miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5314 5' -57.9 NC_001798.1 + 1405 0.66 0.808881
Target:  5'- gGCCGcaGCGGcGCGCCCAGGccccAGCg-- -3'
miRNA:   3'- gCGGUc-CGCCaUGCGGGUCC----UUGaau -5'
5314 5' -57.9 NC_001798.1 + 1532 0.68 0.714853
Target:  5'- gCGCCGggagcacggcgcGGCGGUAcuCGCgCGGGGACa-- -3'
miRNA:   3'- -GCGGU------------CCGCCAU--GCGgGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 3202 0.66 0.825217
Target:  5'- gGCCggcgcggAGGCGGgcgcgGCGCUCAGGcGCc-- -3'
miRNA:   3'- gCGG-------UCCGCCa----UGCGGGUCCuUGaau -5'
5314 5' -57.9 NC_001798.1 + 9988 1.06 0.002615
Target:  5'- cCGCCAGGCGGUACGCCCAGGAACUUAc -3'
miRNA:   3'- -GCGGUCCGCCAUGCGGGUCCUUGAAU- -5'
5314 5' -57.9 NC_001798.1 + 15045 0.68 0.684871
Target:  5'- gCGUgGGGCGGaUGgGCCCGGGGcgcGCg-- -3'
miRNA:   3'- -GCGgUCCGCC-AUgCGGGUCCU---UGaau -5'
5314 5' -57.9 NC_001798.1 + 19286 0.66 0.800049
Target:  5'- gGCguGGUGGUgcccgGCGaCCGGGAACg-- -3'
miRNA:   3'- gCGguCCGCCA-----UGCgGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 22955 0.67 0.744207
Target:  5'- uGCCgacgAGGCGGccccgGCGUCCGGGGAg--- -3'
miRNA:   3'- gCGG----UCCGCCa----UGCGGGUCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 24462 0.68 0.734507
Target:  5'- gCGCCGcGGgGGUGCucgccGCCCuGGGGCg-- -3'
miRNA:   3'- -GCGGU-CCgCCAUG-----CGGGuCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 25580 0.67 0.769884
Target:  5'- uGCCGGGCgaggaccuggccgcGGgcCGCgCCGGGGGCg-- -3'
miRNA:   3'- gCGGUCCG--------------CCauGCG-GGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 27510 0.66 0.808881
Target:  5'- aGCCGcGCGGggGCGCCCgcGGGAAg--- -3'
miRNA:   3'- gCGGUcCGCCa-UGCGGG--UCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 28873 0.67 0.772686
Target:  5'- gGCC-GGCGGa--GCCCcGGAGCUc- -3'
miRNA:   3'- gCGGuCCGCCaugCGGGuCCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 29404 0.7 0.583377
Target:  5'- gCGCC-GGCGGgGCGCCgGgGGGACUc- -3'
miRNA:   3'- -GCGGuCCGCCaUGCGGgU-CCUUGAau -5'
5314 5' -57.9 NC_001798.1 + 29916 0.73 0.439026
Target:  5'- uCG-CGGGCGGUGgGCUCGGGGGCg-- -3'
miRNA:   3'- -GCgGUCCGCCAUgCGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 34794 0.66 0.817554
Target:  5'- cCGCCGGcGCGGcccgGgGCCCcGGGGCc-- -3'
miRNA:   3'- -GCGGUC-CGCCa---UgCGGGuCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 34852 0.72 0.484205
Target:  5'- cCGCCGGGCGGgggACGCCUuccgcccggcgccGGGcGGCUa- -3'
miRNA:   3'- -GCGGUCCGCCa--UGCGGG-------------UCC-UUGAau -5'
5314 5' -57.9 NC_001798.1 + 36511 0.68 0.714853
Target:  5'- gGCCGGGCGGggGCGCgCggcggccgggcGGGGGCg-- -3'
miRNA:   3'- gCGGUCCGCCa-UGCGgG-----------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 36553 0.68 0.714853
Target:  5'- gGCCGGGCGGggGCGCgCggcggccgggcGGGGGCg-- -3'
miRNA:   3'- gCGGUCCGCCa-UGCGgG-----------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 36595 0.68 0.714853
Target:  5'- gGCCGGGCGGggGCGCgCggcggccgggcGGGGGCg-- -3'
miRNA:   3'- gCGGUCCGCCa-UGCGgG-----------UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 37169 0.69 0.664652
Target:  5'- cCGCCuGGCGGgccgcucgGCGCgCCAGGcGCc-- -3'
miRNA:   3'- -GCGGuCCGCCa-------UGCG-GGUCCuUGaau -5'
5314 5' -57.9 NC_001798.1 + 39229 0.71 0.543338
Target:  5'- gGCCAGcaCGGga-GCCCAGGGGCUg- -3'
miRNA:   3'- gCGGUCc-GCCaugCGGGUCCUUGAau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.