miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 3' -57.6 NC_001798.1 + 8646 1.09 0.002143
Target:  5'- aGGAGGGCCACGACGAGACAGGCGAUAa -3'
miRNA:   3'- -CCUCCCGGUGCUGCUCUGUCCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 6227 0.82 0.144132
Target:  5'- cGGGGGGCCGgcCGGgGGGACGGGCGGg- -3'
miRNA:   3'- -CCUCCCGGU--GCUgCUCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 146079 0.82 0.144132
Target:  5'- gGGAGGGguCCGgGGCGAGGCGGGCGGg- -3'
miRNA:   3'- -CCUCCC--GGUgCUGCUCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 114494 0.79 0.219835
Target:  5'- gGGAGGcCCugGACGGGACGGGCa--- -3'
miRNA:   3'- -CCUCCcGGugCUGCUCUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 34687 0.79 0.22521
Target:  5'- gGGaAGGGgCGCGGCGGGACGGGgGAa- -3'
miRNA:   3'- -CC-UCCCgGUGCUGCUCUGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 6036 0.77 0.272297
Target:  5'- aGGGGGCCACaGCGAGACAgagacgccggcGGCGAg- -3'
miRNA:   3'- cCUCCCGGUGcUGCUCUGU-----------CCGCUau -5'
5316 3' -57.6 NC_001798.1 + 54384 0.76 0.326972
Target:  5'- cGGGGGGCCGCGGCGcGGucGGCGGg- -3'
miRNA:   3'- -CCUCCCGGUGCUGCuCUguCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 15458 0.76 0.334352
Target:  5'- cGGGGGGUCGCGugGguAGACguGGGCGGg- -3'
miRNA:   3'- -CCUCCCGGUGCugC--UCUG--UCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 68 0.75 0.357217
Target:  5'- aGGcGGGCgGCGGCGgcGGGCGGGCGGc- -3'
miRNA:   3'- -CCuCCCGgUGCUGC--UCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 154406 0.75 0.357217
Target:  5'- aGGcGGGCgGCGGCGgcGGGCGGGCGGc- -3'
miRNA:   3'- -CCuCCCGgUGCUGC--UCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 10672 0.75 0.381157
Target:  5'- gGGGGGGCCacagcgccacccACGACGGGcGCAGGgGAc- -3'
miRNA:   3'- -CCUCCCGG------------UGCUGCUC-UGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 75130 0.74 0.414699
Target:  5'- gGGcAGGGCgGCGGCGAcGACGGGCc--- -3'
miRNA:   3'- -CC-UCCCGgUGCUGCU-CUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 6399 0.74 0.414699
Target:  5'- cGGGGGGCCggggggACGGgGGGACGGGgGGa- -3'
miRNA:   3'- -CCUCCCGG------UGCUgCUCUGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 111593 0.74 0.423364
Target:  5'- cGGGGGGCC-CGGCGGGGC-GGCc--- -3'
miRNA:   3'- -CCUCCCGGuGCUGCUCUGuCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 15328 0.74 0.432137
Target:  5'- cGAGGGCCcCGGCGcgguagcgggGGGCgAGGCGGUGa -3'
miRNA:   3'- cCUCCCGGuGCUGC----------UCUG-UCCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 24645 0.73 0.441014
Target:  5'- cGGAGGGCUuCGACGGcGACcuGGCGGc- -3'
miRNA:   3'- -CCUCCCGGuGCUGCU-CUGu-CCGCUau -5'
5316 3' -57.6 NC_001798.1 + 46011 0.73 0.449994
Target:  5'- gGGAGGGCgugggucccCGCGACGAGcaGCuGGGCGAc- -3'
miRNA:   3'- -CCUCCCG---------GUGCUGCUC--UG-UCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 85266 0.73 0.458162
Target:  5'- -cGGGGCCGCGcGCGAGGCuucggggGGGCGGg- -3'
miRNA:   3'- ccUCCCGGUGC-UGCUCUG-------UCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 22789 0.73 0.459074
Target:  5'- --cGGGCCGCGGCgGAGACGaccGGCGGc- -3'
miRNA:   3'- ccuCCCGGUGCUG-CUCUGU---CCGCUau -5'
5316 3' -57.6 NC_001798.1 + 8544 0.73 0.477521
Target:  5'- cGGAcguGGGUCGCGGCGAGGgguggGGGCGAa- -3'
miRNA:   3'- -CCU---CCCGGUGCUGCUCUg----UCCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.