miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 3' -57.6 NC_001798.1 + 68 0.75 0.357217
Target:  5'- aGGcGGGCgGCGGCGgcGGGCGGGCGGc- -3'
miRNA:   3'- -CCuCCCGgUGCUGC--UCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 2506 0.68 0.734409
Target:  5'- cGGGGcgcggcGGCCGCGGCGGcGGCGucGGCGGg- -3'
miRNA:   3'- -CCUC------CCGGUGCUGCU-CUGU--CCGCUau -5'
5316 3' -57.6 NC_001798.1 + 2561 0.69 0.685158
Target:  5'- gGGAgGGGCgGCcGCGGGGCGGGgGGc- -3'
miRNA:   3'- -CCU-CCCGgUGcUGCUCUGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 3013 0.67 0.799479
Target:  5'- cGGGGG-CGCGGCGGGcCGGGCu--- -3'
miRNA:   3'- cCUCCCgGUGCUGCUCuGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 3319 0.69 0.665097
Target:  5'- -cGGGGCgGCGGCGGcGGCGGGCu--- -3'
miRNA:   3'- ccUCCCGgUGCUGCU-CUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 4088 0.66 0.849634
Target:  5'- cGGGGGuCCGgGcCGGGGCGGGCu--- -3'
miRNA:   3'- cCUCCC-GGUgCuGCUCUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 4366 0.68 0.753566
Target:  5'- cGGGGGGCgCGcCGGCGGcGguGGUGGUGg -3'
miRNA:   3'- -CCUCCCG-GU-GCUGCUcUguCCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 4419 0.7 0.655024
Target:  5'- cGGGGGUCGCGGCGAcaGGCuGGCcAUGg -3'
miRNA:   3'- cCUCCCGGUGCUGCU--CUGuCCGcUAU- -5'
5316 3' -57.6 NC_001798.1 + 4574 0.73 0.48688
Target:  5'- uGGAGGGgguCCGCGGCgGAGA-AGGCGAg- -3'
miRNA:   3'- -CCUCCC---GGUGCUG-CUCUgUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 6036 0.77 0.272297
Target:  5'- aGGGGGCCACaGCGAGACAgagacgccggcGGCGAg- -3'
miRNA:   3'- cCUCCCGGUGcUGCUCUGU-----------CCGCUau -5'
5316 3' -57.6 NC_001798.1 + 6227 0.82 0.144132
Target:  5'- cGGGGGGCCGgcCGGgGGGACGGGCGGg- -3'
miRNA:   3'- -CCUCCCGGU--GCUgCUCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 6262 0.66 0.857362
Target:  5'- gGGAcGGGCCGgggggacgggcCGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGGU-----------GCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 6301 0.66 0.857362
Target:  5'- gGGAcGGGCCGgggggacgggcCGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGGU-----------GCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 6340 0.66 0.857362
Target:  5'- gGGAcGGGCCGgggggacgggcCGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGGU-----------GCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 6399 0.74 0.414699
Target:  5'- cGGGGGGCCggggggACGGgGGGACGGGgGGa- -3'
miRNA:   3'- -CCUCCCGG------UGCUgCUCUGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 6539 0.68 0.734409
Target:  5'- gGGAcGGGCCggggggACGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGG------UGCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 6581 0.68 0.734409
Target:  5'- gGGAcGGGCCggggggACGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGG------UGCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 8544 0.73 0.477521
Target:  5'- cGGAcguGGGUCGCGGCGAGGgguggGGGCGAa- -3'
miRNA:   3'- -CCU---CCCGGUGCUGCUCUg----UCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 8646 1.09 0.002143
Target:  5'- aGGAGGGCCACGACGAGACAGGCGAUAa -3'
miRNA:   3'- -CCUCCCGGUGCUGCUCUGUCCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 9096 0.7 0.614631
Target:  5'- uGGAGGGCCACGggaaaggccGCGGGGgAGccgccGCGAg- -3'
miRNA:   3'- -CCUCCCGGUGC---------UGCUCUgUC-----CGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.