miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 5' -64.1 NC_001798.1 + 8682 1.1 0.000576
Target:  5'- aCGCACCGCGUGCGCCGCCGUCGGCGCc -3'
miRNA:   3'- -GCGUGGCGCACGCGGCGGCAGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 149241 0.81 0.067272
Target:  5'- gGC-CCGCGgggGCGUCGCCGgcCGGCGCg -3'
miRNA:   3'- gCGuGGCGCa--CGCGGCGGCa-GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 32059 0.8 0.0782
Target:  5'- gGCGuCCGCGgGCGCCGCgccccCGUCGGCGUc -3'
miRNA:   3'- gCGU-GGCGCaCGCGGCG-----GCAGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 93263 0.8 0.08018
Target:  5'- aCGC-CCGCGgcccGCGCCggcGCCGUCGGgGCg -3'
miRNA:   3'- -GCGuGGCGCa---CGCGG---CGGCAGCCgCG- -5'
5316 5' -64.1 NC_001798.1 + 31574 0.8 0.08018
Target:  5'- gCGCGCCGCGcgcccccGCGCgGCCGUCGccccGCGCg -3'
miRNA:   3'- -GCGUGGCGCa------CGCGgCGGCAGC----CGCG- -5'
5316 5' -64.1 NC_001798.1 + 153671 0.79 0.08771
Target:  5'- gCGCGuCCGCGggcggggacgcggGgGCCGCCGcCGGCGCa -3'
miRNA:   3'- -GCGU-GGCGCa------------CgCGGCGGCaGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 97453 0.79 0.088587
Target:  5'- uGCGCCGCGUgcugGCGCgGCUGggggccggCGGCGCg -3'
miRNA:   3'- gCGUGGCGCA----CGCGgCGGCa-------GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1282 0.79 0.095435
Target:  5'- aGCACCaGCGggggcGCGUCGCCGUCGG-GCu -3'
miRNA:   3'- gCGUGG-CGCa----CGCGGCGGCAGCCgCG- -5'
5316 5' -64.1 NC_001798.1 + 139302 0.78 0.102529
Target:  5'- aGCGCCGCGU-CGCCGCCccgcguccgcaucGcCGGCGCc -3'
miRNA:   3'- gCGUGGCGCAcGCGGCGG-------------CaGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 26274 0.78 0.107973
Target:  5'- uCGCACCGCGccUGCGCgCGCUGgggccugGGCGCg -3'
miRNA:   3'- -GCGUGGCGC--ACGCG-GCGGCag-----CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 37159 0.78 0.11066
Target:  5'- uCGCGCCGCGc-CGCCuggcggGCCGcUCGGCGCg -3'
miRNA:   3'- -GCGUGGCGCacGCGG------CGGC-AGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 25426 0.77 0.124448
Target:  5'- uCGCugGCCGCGcgcUGCGCCGCCccgccccccggCGGCGCg -3'
miRNA:   3'- -GCG--UGGCGC---ACGCGGCGGca---------GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 147466 0.77 0.134509
Target:  5'- cCGCGCCGCGUGaGCCGuCCGcCGGgGg -3'
miRNA:   3'- -GCGUGGCGCACgCGGC-GGCaGCCgCg -5'
5316 5' -64.1 NC_001798.1 + 2499 0.76 0.140154
Target:  5'- aGCGCCGCGggGCGCgGCggccgcggcggcggCGUCGGCGg -3'
miRNA:   3'- gCGUGGCGCa-CGCGgCG--------------GCAGCCGCg -5'
5316 5' -64.1 NC_001798.1 + 25072 0.76 0.141172
Target:  5'- aGCcCCGCcccggccaggGCGCCGCCGggCGGCGCc -3'
miRNA:   3'- gCGuGGCGca--------CGCGGCGGCa-GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 2249 0.76 0.148136
Target:  5'- gGCGgCGgGcGCGCCGCCGgggggcggggCGGCGCa -3'
miRNA:   3'- gCGUgGCgCaCGCGGCGGCa---------GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 43053 0.76 0.151735
Target:  5'- uGCGgCGCGUGaGCCGCCGgcCGaGCGCg -3'
miRNA:   3'- gCGUgGCGCACgCGGCGGCa-GC-CGCG- -5'
5316 5' -64.1 NC_001798.1 + 79972 0.76 0.155412
Target:  5'- gGCGCCGCGUcCGCCGCCGggccccCGGgGg -3'
miRNA:   3'- gCGUGGCGCAcGCGGCGGCa-----GCCgCg -5'
5316 5' -64.1 NC_001798.1 + 79491 0.76 0.155412
Target:  5'- cCGCAgCUGC-UGCGCCGCCGgggcgaGGCGUa -3'
miRNA:   3'- -GCGU-GGCGcACGCGGCGGCag----CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 24461 0.76 0.15917
Target:  5'- gGCGCCGCGgggGUGCuCGCCGcCcuggGGCGCc -3'
miRNA:   3'- gCGUGGCGCa--CGCG-GCGGCaG----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.