miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 5' -64.1 NC_001798.1 + 173 0.73 0.231294
Target:  5'- gCGCGCCGCG-GgGCUGCCuUCccgcgGGCGCc -3'
miRNA:   3'- -GCGUGGCGCaCgCGGCGGcAG-----CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1282 0.79 0.095435
Target:  5'- aGCACCaGCGggggcGCGUCGCCGUCGG-GCu -3'
miRNA:   3'- gCGUGG-CGCa----CGCGGCGGCAGCCgCG- -5'
5316 5' -64.1 NC_001798.1 + 1371 0.73 0.226076
Target:  5'- gCGCACgGCGUcgcgccccaGCGCCacguagacggGCCGcagCGGCGCg -3'
miRNA:   3'- -GCGUGgCGCA---------CGCGG----------CGGCa--GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1441 0.66 0.581018
Target:  5'- gCGCGgUGCGagUGCGCC-UCGUCcucgcagaaguccGGCGCg -3'
miRNA:   3'- -GCGUgGCGC--ACGCGGcGGCAG-------------CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1502 0.67 0.501967
Target:  5'- cCGCGCCcgagGCG-GCgGCCcgGCCGUCcagcgccgggagcacGGCGCg -3'
miRNA:   3'- -GCGUGG----CGCaCG-CGG--CGGCAG---------------CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1573 0.67 0.498354
Target:  5'- gGCACCaGCGUGUcgggGCCGaaGcgCGuGCGCa -3'
miRNA:   3'- gCGUGG-CGCACG----CGGCggCa-GC-CGCG- -5'
5316 5' -64.1 NC_001798.1 + 1623 0.69 0.388374
Target:  5'- gGCcCCGCGgcagagGCGCaGCgG-CGGCGCg -3'
miRNA:   3'- gCGuGGCGCa-----CGCGgCGgCaGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1664 0.7 0.336123
Target:  5'- gGCG-CGCGUGCGCgGCCuccaCGcGCGCg -3'
miRNA:   3'- gCGUgGCGCACGCGgCGGca--GC-CGCG- -5'
5316 5' -64.1 NC_001798.1 + 1733 0.72 0.264764
Target:  5'- uGCGgCGCaGgucccGCGCCGCCGgccagcgcaCGGCGCa -3'
miRNA:   3'- gCGUgGCG-Ca----CGCGGCGGCa--------GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 1786 0.73 0.243683
Target:  5'- aGCACCucgcaggccagguagGCGUGCuGCCGCgagaccacgggccCGUCGGCGg -3'
miRNA:   3'- gCGUGG---------------CGCACG-CGGCG-------------GCAGCCGCg -5'
5316 5' -64.1 NC_001798.1 + 1960 0.69 0.428819
Target:  5'- aCGCcCUGCGcgcccaGCGCCGagaCGUCgggGGCGCg -3'
miRNA:   3'- -GCGuGGCGCa-----CGCGGCg--GCAG---CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 2187 0.72 0.289192
Target:  5'- gGCACCugGCGcauccagGCCGCCGcgCGGCGCa -3'
miRNA:   3'- gCGUGG--CGCacg----CGGCGGCa-GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 2249 0.76 0.148136
Target:  5'- gGCGgCGgGcGCGCCGCCGgggggcggggCGGCGCa -3'
miRNA:   3'- gCGUgGCgCaCGCGGCGGCa---------GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 2418 0.71 0.322168
Target:  5'- gGCGCCgGCGUGUggcugggccccgGCgGCUGgCGGCGCc -3'
miRNA:   3'- gCGUGG-CGCACG------------CGgCGGCaGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 2499 0.76 0.140154
Target:  5'- aGCGCCGCGggGCGCgGCggccgcggcggcggCGUCGGCGg -3'
miRNA:   3'- gCGUGGCGCa-CGCGgCG--------------GCAGCCGCg -5'
5316 5' -64.1 NC_001798.1 + 2548 0.68 0.489374
Target:  5'- gCGCGgcccCCGCGggagGgGCgGCCG-CGGgGCg -3'
miRNA:   3'- -GCGU----GGCGCa---CgCGgCGGCaGCCgCG- -5'
5316 5' -64.1 NC_001798.1 + 2608 0.74 0.201463
Target:  5'- gGgGgCGCGggGCGCCGCCcggCGGCGCc -3'
miRNA:   3'- gCgUgGCGCa-CGCGGCGGca-GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 2672 0.68 0.462903
Target:  5'- cCGCGgCGCGgaggcggGCGCgGCgagcgaGUCGGcCGCg -3'
miRNA:   3'- -GCGUgGCGCa------CGCGgCGg-----CAGCC-GCG- -5'
5316 5' -64.1 NC_001798.1 + 2849 0.67 0.544274
Target:  5'- gCGCACgGCG-GCcacggcggccucGCUGCCGcCGGCcacGCg -3'
miRNA:   3'- -GCGUGgCGCaCG------------CGGCGGCaGCCG---CG- -5'
5316 5' -64.1 NC_001798.1 + 2955 0.67 0.507408
Target:  5'- gCGCGCagGCGgggcGCGUCGgCGUgCGGCGg -3'
miRNA:   3'- -GCGUGg-CGCa---CGCGGCgGCA-GCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.