miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5317 5' -51.1 NC_001798.1 + 8312 1.16 0.003651
Target:  5'- gGGGGCGAGAGGUCAAUAGAUUUCCCCa -3'
miRNA:   3'- -CCCCGCUCUCCAGUUAUCUAAAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 136004 0.79 0.547637
Target:  5'- gGGGGCGGGGaGUCGGUcGGcgUCCCCg -3'
miRNA:   3'- -CCCCGCUCUcCAGUUAuCUaaAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 55996 0.78 0.568175
Target:  5'- gGGGGCGAGGGGcUggUAGGcgggUCCCg -3'
miRNA:   3'- -CCCCGCUCUCCaGuuAUCUaa--AGGGg -5'
5317 5' -51.1 NC_001798.1 + 36170 0.74 0.773213
Target:  5'- uGGGGgGAGAGuGUCG-UGGGUguguuuucgugUCCCCc -3'
miRNA:   3'- -CCCCgCUCUC-CAGUuAUCUAa----------AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 8359 0.73 0.819253
Target:  5'- aGGaGCcggGAGAGuUCAAUAGAUUUCCCa -3'
miRNA:   3'- cCC-CG---CUCUCcAGUUAUCUAAAGGGg -5'
5317 5' -51.1 NC_001798.1 + 91473 0.73 0.852942
Target:  5'- cGGGGUGGGAuGG-CGGUGccGAUgUUCCCCc -3'
miRNA:   3'- -CCCCGCUCU-CCaGUUAU--CUA-AAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 27195 0.72 0.86086
Target:  5'- cGGGGgGAGGGG-CGggGGAag-CCCCc -3'
miRNA:   3'- -CCCCgCUCUCCaGUuaUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 15453 0.72 0.86086
Target:  5'- uGGGGCGGGGGGUCGcGUGGGUa----- -3'
miRNA:   3'- -CCCCGCUCUCCAGU-UAUCUAaagggg -5'
5317 5' -51.1 NC_001798.1 + 138230 0.72 0.868561
Target:  5'- -cGGCGGGGGuGUCGAUcAGGUgcccCCCCg -3'
miRNA:   3'- ccCCGCUCUC-CAGUUA-UCUAaa--GGGG- -5'
5317 5' -51.1 NC_001798.1 + 34729 0.72 0.87604
Target:  5'- aGGGGCGAG-GGUCGGgcccgGGAgcggggcggCCCg -3'
miRNA:   3'- -CCCCGCUCuCCAGUUa----UCUaaa------GGGg -5'
5317 5' -51.1 NC_001798.1 + 28195 0.72 0.883291
Target:  5'- aGGGCGGGGGGaaggCGccGGAgg-CCCCg -3'
miRNA:   3'- cCCCGCUCUCCa---GUuaUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 153628 0.72 0.890309
Target:  5'- aGGGGCGucaGGGGGUCGGaggGGAggcguaccUUCCCg -3'
miRNA:   3'- -CCCCGC---UCUCCAGUUa--UCUa-------AAGGGg -5'
5317 5' -51.1 NC_001798.1 + 67223 0.72 0.896422
Target:  5'- uGGGGUucGGGGGUCcuUGGGUUcccguggaggaacUCCCCg -3'
miRNA:   3'- -CCCCGc-UCUCCAGuuAUCUAA-------------AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 3893 0.71 0.903628
Target:  5'- gGGGGCGGGGGGcCGGccccGGGccacggcUCCCCg -3'
miRNA:   3'- -CCCCGCUCUCCaGUUa---UCUaa-----AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 69184 0.71 0.926773
Target:  5'- cGGGCcagguggGGGAGGUCGGUGGGgugCCgCa -3'
miRNA:   3'- cCCCG-------CUCUCCAGUUAUCUaaaGGgG- -5'
5317 5' -51.1 NC_001798.1 + 151844 0.7 0.951325
Target:  5'- cGGGGCGuGAGG-CG--GGAc--CCCCg -3'
miRNA:   3'- -CCCCGCuCUCCaGUuaUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 150868 0.7 0.951325
Target:  5'- cGGGCuGGGAGGUUccgcGGGUcgCCCCc -3'
miRNA:   3'- cCCCG-CUCUCCAGuua-UCUAaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 67196 0.69 0.955392
Target:  5'- gGGGGCGGGGGGaCAGccUGGGg--UCCUn -3'
miRNA:   3'- -CCCCGCUCUCCaGUU--AUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 152522 0.69 0.959223
Target:  5'- gGGGGCG-GAGGg----AGGgaaUCCCCc -3'
miRNA:   3'- -CCCCGCuCUCCaguuaUCUaa-AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 48634 0.69 0.959223
Target:  5'- aGGGGCGGGAGGggCGGgaggaaGGAcacgccUCCCUu -3'
miRNA:   3'- -CCCCGCUCUCCa-GUUa-----UCUaa----AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.