miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5317 5' -51.1 NC_001798.1 + 2537 0.68 0.975002
Target:  5'- cGGGGCGGGGGG-CGcgGc----CCCCg -3'
miRNA:   3'- -CCCCGCUCUCCaGUuaUcuaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 3893 0.71 0.903628
Target:  5'- gGGGGCGGGGGGcCGGccccGGGccacggcUCCCCg -3'
miRNA:   3'- -CCCCGCUCUCCaGUUa---UCUaa-----AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 6613 0.67 0.98578
Target:  5'- gGGGGaCGGGGGGaCGGgccgGGGggacggggCCCCg -3'
miRNA:   3'- -CCCC-GCUCUCCaGUUa---UCUaaa-----GGGG- -5'
5317 5' -51.1 NC_001798.1 + 8312 1.16 0.003651
Target:  5'- gGGGGCGAGAGGUCAAUAGAUUUCCCCa -3'
miRNA:   3'- -CCCCGCUCUCCAGUUAUCUAAAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 8359 0.73 0.819253
Target:  5'- aGGaGCcggGAGAGuUCAAUAGAUUUCCCa -3'
miRNA:   3'- cCC-CG---CUCUCcAGUUAUCUAAAGGGg -5'
5317 5' -51.1 NC_001798.1 + 9174 0.68 0.97986
Target:  5'- gGGGGC-AG-GGUCucUGGcgggUCCCCg -3'
miRNA:   3'- -CCCCGcUCuCCAGuuAUCuaa-AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 15191 0.67 0.983978
Target:  5'- gGGGGUGGGGGGgcuggCGAgccggggGGAgcgUCCgCg -3'
miRNA:   3'- -CCCCGCUCUCCa----GUUa------UCUaa-AGGgG- -5'
5317 5' -51.1 NC_001798.1 + 15409 0.68 0.972276
Target:  5'- cGGGGUugcggguccggGAGGGGUUguuUGGGg--CCCCg -3'
miRNA:   3'- -CCCCG-----------CUCUCCAGuu-AUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 15453 0.72 0.86086
Target:  5'- uGGGGCGGGGGGUCGcGUGGGUa----- -3'
miRNA:   3'- -CCCCGCUCUCCAGU-UAUCUAaagggg -5'
5317 5' -51.1 NC_001798.1 + 15908 0.66 0.994985
Target:  5'- cGGGGUGGGaAGGgggcguacggaccgUCAucUAGGg--CCCCg -3'
miRNA:   3'- -CCCCGCUC-UCC--------------AGUu-AUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 16233 0.69 0.962821
Target:  5'- gGGGGCGGuGGGGcCGGggccc-UCCCCg -3'
miRNA:   3'- -CCCCGCU-CUCCaGUUaucuaaAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 18231 0.69 0.966192
Target:  5'- uGGGCGGGAagGGUgGAUGG-UUUCCg- -3'
miRNA:   3'- cCCCGCUCU--CCAgUUAUCuAAAGGgg -5'
5317 5' -51.1 NC_001798.1 + 20515 0.66 0.99435
Target:  5'- cGGGGCcuGGGGUUgcgccgcgcgGAUAGGUcugucgcUUCUCCa -3'
miRNA:   3'- -CCCCGcuCUCCAG----------UUAUCUA-------AAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 21815 0.67 0.988916
Target:  5'- cGGGGCG-GAGccCGcgGGAUgacgcgggCCCCg -3'
miRNA:   3'- -CCCCGCuCUCcaGUuaUCUAaa------GGGG- -5'
5317 5' -51.1 NC_001798.1 + 27027 0.66 0.991485
Target:  5'- cGGGCG-GGGGUCGGgcGGgcggcacgUCuCCCg -3'
miRNA:   3'- cCCCGCuCUCCAGUUauCUaa------AG-GGG- -5'
5317 5' -51.1 NC_001798.1 + 27195 0.72 0.86086
Target:  5'- cGGGGgGAGGGG-CGggGGAag-CCCCc -3'
miRNA:   3'- -CCCCgCUCUCCaGUuaUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 27716 0.66 0.995422
Target:  5'- cGGGGCGGGAGuccccGUCcugccgccgCCCCu -3'
miRNA:   3'- -CCCCGCUCUC-----CAGuuaucuaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 28195 0.72 0.883291
Target:  5'- aGGGCGGGGGGaaggCGccGGAgg-CCCCg -3'
miRNA:   3'- cCCCGCUCUCCa---GUuaUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 29445 0.69 0.969644
Target:  5'- gGGGGCGGcgcaugcuaauGGGGUUcuUGGAguacacccgguuggUCCCCg -3'
miRNA:   3'- -CCCCGCU-----------CUCCAGuuAUCUaa------------AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 29500 0.67 0.98578
Target:  5'- cGGGGCcgccccGAGAGGggg--GGAUUcccUCCCUc -3'
miRNA:   3'- -CCCCG------CUCUCCaguuaUCUAA---AGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.