miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5318 3' -51.6 NC_001798.1 + 7934 1.1 0.005867
Target:  5'- aAACACAUCGCCAUAUGCACGACCUGCu -3'
miRNA:   3'- -UUGUGUAGCGGUAUACGUGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 100084 0.8 0.401137
Target:  5'- gGGCGCAUCGCCGUcgcgugGUGCGAgCUGCa -3'
miRNA:   3'- -UUGUGUAGCGGUAua----CGUGCUgGACG- -5'
5318 3' -51.6 NC_001798.1 + 65015 0.78 0.506114
Target:  5'- uGAgGCA-CGCCGUGUGCAgGcCCUGCa -3'
miRNA:   3'- -UUgUGUaGCGGUAUACGUgCuGGACG- -5'
5318 3' -51.6 NC_001798.1 + 100636 0.77 0.547175
Target:  5'- cAGCGCcgCaaCCAgcUGCACGACCUGCg -3'
miRNA:   3'- -UUGUGuaGc-GGUauACGUGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 141806 0.76 0.620088
Target:  5'- gGACAagGUCGCCAUAUGCuucACGcccggaaACCUGCg -3'
miRNA:   3'- -UUGUg-UAGCGGUAUACG---UGC-------UGGACG- -5'
5318 3' -51.6 NC_001798.1 + 63500 0.75 0.684995
Target:  5'- uAGCACGagGCUgucGUAUGCACGGCCUcgucGCg -3'
miRNA:   3'- -UUGUGUagCGG---UAUACGUGCUGGA----CG- -5'
5318 3' -51.6 NC_001798.1 + 128142 0.74 0.695526
Target:  5'- --aACGUucgagCGCCAccUGCGCGGCCUGCu -3'
miRNA:   3'- uugUGUA-----GCGGUauACGUGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 154082 0.74 0.705999
Target:  5'- cGGCACGgcuggagCGCCGgg-GCGCGGCCgGCg -3'
miRNA:   3'- -UUGUGUa------GCGGUauaCGUGCUGGaCG- -5'
5318 3' -51.6 NC_001798.1 + 149248 0.73 0.765074
Target:  5'- gGGgGCGUCGCCGgccggcgcggGCGCGcCCUGCu -3'
miRNA:   3'- -UUgUGUAGCGGUaua-------CGUGCuGGACG- -5'
5318 3' -51.6 NC_001798.1 + 14784 0.73 0.767046
Target:  5'- uAACGCA-CGCUcggGUGCGCGuaucGCCUGCg -3'
miRNA:   3'- -UUGUGUaGCGGua-UACGUGC----UGGACG- -5'
5318 3' -51.6 NC_001798.1 + 96327 0.72 0.79595
Target:  5'- cAACGCG-CuCCAgGUGCGCGugCUGCg -3'
miRNA:   3'- -UUGUGUaGcGGUaUACGUGCugGACG- -5'
5318 3' -51.6 NC_001798.1 + 148116 0.72 0.814432
Target:  5'- aGGCACGcgCGCgGUGUGU-CGACUUGCa -3'
miRNA:   3'- -UUGUGUa-GCGgUAUACGuGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 96941 0.72 0.814432
Target:  5'- cGCGCGagCGCUcuGUGUGCugGACCagGCg -3'
miRNA:   3'- uUGUGUa-GCGG--UAUACGugCUGGa-CG- -5'
5318 3' -51.6 NC_001798.1 + 101106 0.72 0.832194
Target:  5'- gAACACAagGCCAgaaagaaggGCACGAgcgcCCUGCu -3'
miRNA:   3'- -UUGUGUagCGGUaua------CGUGCU----GGACG- -5'
5318 3' -51.6 NC_001798.1 + 26337 0.71 0.840783
Target:  5'- gGGCGCGaCGCCGUGcGCGgCGGCCcgGCg -3'
miRNA:   3'- -UUGUGUaGCGGUAUaCGU-GCUGGa-CG- -5'
5318 3' -51.6 NC_001798.1 + 83797 0.71 0.849165
Target:  5'- gGACGCGggGCCcgGaacaacUGCACGGCCUGa -3'
miRNA:   3'- -UUGUGUagCGGuaU------ACGUGCUGGACg -5'
5318 3' -51.6 NC_001798.1 + 60484 0.71 0.857334
Target:  5'- gGACGCgGUCGuCCAUAUGCGCuGcACCaGCg -3'
miRNA:   3'- -UUGUG-UAGC-GGUAUACGUG-C-UGGaCG- -5'
5318 3' -51.6 NC_001798.1 + 98779 0.71 0.870709
Target:  5'- cGAC-CGUCGCCGccggccacgccagcUGcGCGCGcACCUGCg -3'
miRNA:   3'- -UUGuGUAGCGGU--------------AUaCGUGC-UGGACG- -5'
5318 3' -51.6 NC_001798.1 + 114524 0.71 0.873
Target:  5'- --uGCAUCGCCAgcUGCGCGccauCCaGCa -3'
miRNA:   3'- uugUGUAGCGGUauACGUGCu---GGaCG- -5'
5318 3' -51.6 NC_001798.1 + 52408 0.7 0.880484
Target:  5'- gGGCugAaCGCCGUGcuggGCGCGGCCgUGUa -3'
miRNA:   3'- -UUGugUaGCGGUAUa---CGUGCUGG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.